Computes low-dimensional point representations of high-dimensional numerical data according to the data visualization method Adaptable Radial Axes described in: Manuel Rubio-Sánchez, Alberto Sanchez, and Dirk J. Lehmann (2017) "Adaptable radial axes plots for improved multivariate data visualization" <doi:10.1111/cgf.13196>.

The image of the amino acid transform on the protein level is drawn, and the automatic routing of the functional elements such as the domain and the mutation site is completed.

This package provides functions to process minute level actigraphy-measured activity counts data and extract commonly used physical activity volume and fragmentation metrics.

Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.

Exploration of Weather Research & Forecasting ('WRF') Model data of Servicio Meteorologico Nacional (SMN) from Amazon Web Services (<https://registry.opendata.aws/smn-ar-wrf-dataset/>) cloud. The package provides the possibility of data downloading, processing and correction methods. It also has map management and series exploration of available meteorological variables of WRF forecast.

This package provides a very fast and robust interface to ArcGIS Geocoding Services'. Provides capabilities for reverse geocoding, finding address candidates, character-by-character search autosuggestion, and batch geocoding. The public ArcGIS World Geocoder is accessible for free use via arcgisgeocode for all services except batch geocoding. arcgisgeocode also integrates with arcgisutils to provide access to custom locators or private ArcGIS World Geocoder hosted on ArcGIS Enterprise'. Learn more in the Geocode service API reference <https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>.

This package provides tools supporting multi-criteria and group decision making, including variable number of criteria, by means of aggregation operators, spread measures, fuzzy logic connectives, fusion functions, and preordered sets. Possible applications include, but are not limited to, quality management, scientometrics, software engineering, etc.

This package provides a Tcl/Tk GUI for some basic functions in the ade4 package.

Fit, interpret, and compute predictions with oblique random forests. Includes support for partial dependence, variable importance, passing customized functions for variable importance and identification of linear combinations of features. Methods for the oblique random survival forest are described in Jaeger et al., (2023) <DOI:10.1080/10618600.2023.2231048>.

Simple radiocarbon calibration and chronological analysis. This package allows the calibration of radiocarbon ages and modern carbon fraction values using multiple calibration curves. It allows the calculation of highest density region intervals and credible intervals. The package also provides tools for visualising results and estimating statistical summaries.

This package provides functions for Arps decline-curve analysis on oil and gas data. Includes exponential, hyperbolic, harmonic, and hyperbolic-to-exponential models as well as the preceding with initial curtailment or a period of linear rate buildup. Functions included for computing rate, cumulative production, instantaneous decline, EUR, time to economic limit, and performing least-squares best fits.

Package ACV (short for Affine Cross-Validation) offers an improved time-series cross-validation loss estimator which utilizes both in-sample and out-of-sample forecasting performance via a carefully constructed affine weighting scheme. Under the assumption of stationarity, the estimator is the best linear unbiased estimator of the out-of-sample loss. Besides that, the package also offers improved versions of Diebold-Mariano and Ibragimov-Muller tests of equal predictive ability which deliver more power relative to their conventional counterparts. For more information, see the accompanying article Stanek (2021) <doi:10.2139/ssrn.3996166>.

Developed for Computing the probability density function, cumulative distribution function, random generation, estimating the parameters of asymmetric exponential power distribution, and robust regression analysis with error term that follows asymmetric exponential power distribution. The asymmetric exponential power distribution studied here is a special case of that introduced by Dongming and Zinde-Walsh (2009) <doi:10.1016/j.jeconom.2008.09.038>.

Computes the Area Under the Kendall (AUK) estimator for multivariate independence. The AUK estimator is based on the survival copula and quantifies the deviation from the null hypothesis of independence. The methodology implemented in this package is based on the work of Afendras', Markatou', and Papantonis (2025) <doi:10.1016/j.jmva.2025.105589>.

Compute approach bias scores using different scoring algorithms, compute bootstrapped and exact split-half reliability estimates, and compute confidence intervals for individual participant scores.

Flexible parametric Accelerated Hazards (AH) regression models in overall and relative survival frameworks with 13 distinct Baseline Distributions. The AH Model can also be applied to lifetime data with crossed survival curves. Any user-defined parametric distribution can be fitted, given at least an R function defining the cumulative hazard and hazard rate functions. See Chen and Wang (2000) <doi:10.1080/01621459.2000.10474236>, and Lee (2015) <doi:10.1007/s10985-015-9349-5> for more details.

Automated Characterization of Health Information at Large-Scale Longitudinal Evidence Systems. Creates a descriptive statistics summary for an Observational Medical Outcomes Partnership Common Data Model standardized data source. This package includes functions for executing summary queries on the specified data source and exporting reporting content for use across a variety of Observational Health Data Sciences and Informatics community applications.

The successor to the AlphaSim software for breeding program simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>]. Used for stochastic simulations of breeding programs to the level of DNA sequence for every individual. Contained is a wide range of functions for modeling common tasks in a breeding program, such as selection and crossing. These functions allow for constructing simulations of highly complex plant and animal breeding programs via scripting in the R software environment. Such simulations can be used to evaluate overall breeding program performance and conduct research into breeding program design, such as implementation of genomic selection. Included is the Markovian Coalescent Simulator ('MaCS') for fast simulation of biallelic sequences according to a population demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].

You can use this package to create custom pipeline badges in a standard svg format. This is useful for a company to use internally, where it may not be possible to create badges through external providers. This project was inspired by the anybadge library in python.

This package implements the adaptive smoothing spline estimator for the function-on-function linear regression model described in Centofanti et al. (2023) <doi:10.1007/s00180-022-01223-6>.

Predicts amyloid proteins using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.

This is an implementation of the Generalized Discrimination Score (also known as Two Alternatives Forced Choice Score, 2AFC) for various representations of forecasts and verifying observations. The Generalized Discrimination Score is a generic forecast verification framework which can be applied to any of the following verification contexts: dichotomous, polychotomous (ordinal and nominal), continuous, probabilistic, and ensemble. A comprehensive description of the Generalized Discrimination Score, including all equations used in this package, is provided by Mason and Weigel (2009) <doi:10.1175/MWR-D-10-05069.1>.

This package provides functions to perform statistical inference in the balanced one-way ANOVA model with a random factor: confidence intervals, prediction interval, and Weerahandi generalized pivotal quantities. References: Burdick & Graybill (1992, ISBN-13: 978-0824786441); Weerahandi (1995) <doi:10.1007/978-1-4612-0825-9>; Lin & Liao (2008) <doi:10.1016/j.jspi.2008.01.001>.

This package provides a toolbox for programming Clinical Data Standards Interchange Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team, 2021, <https://www.cdisc.org/standards/foundational/adam>). The package is an extension package of the admiral package for pediatric clinical trials.