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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-flowsorted-dlpfc-450k 1.46.0
Propagated dependencies: r-minfi@1.56.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FlowSorted.DLPFC.450k
Licenses: Artistic License 2.0
Build system: r
Synopsis: Illumina HumanMethylation data on sorted frontal cortex cell populations
Description:

Raw data objects for the Illumina 450k DNA methylation microarrays.

r-filterffpe 1.20.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FilterFFPE
Licenses: LGPL 3
Build system: r
Synopsis: FFPE Artificial Chimeric Read Filter for NGS data
Description:

This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) tissues. These artificial chimeric reads can lead to a large number of false positive structural variation (SV) calls. The required input is an indexed BAM file of a FFPE sample.

r-fly-db0 3.22.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/fly.db0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Base Level Annotation databases for fly
Description:

Base annotation databases for fly, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

r-frma 1.62.0
Propagated dependencies: r-preprocesscore@1.72.0 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-mass@7.3-65 r-dbi@1.2.3 r-biocgenerics@0.56.0 r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: http://bioconductor.org
Licenses: GPL 2+
Build system: r
Synopsis: Frozen RMA and Barcode
Description:

Preprocessing and analysis for single microarrays and microarray batches.

r-flowsorted-cordblood-450k 1.38.0
Propagated dependencies: r-minfi@1.56.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FlowSorted.CordBlood.450k
Licenses: Artistic License 2.0
Build system: r
Synopsis: Illumina 450k data on sorted cord blood cells
Description:

Raw data objects to be used for cord blood cell proportion estimation in minfi.

r-flowploidydata 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPloidyData
Licenses: GPL 3
Build system: r
Synopsis: Example Flow Cytometry Data
Description:

This package provides a collection of raw flow cytometry data for use in vignettes for the flowPloidy package.

r-frmatools 1.62.0
Propagated dependencies: r-preprocesscore@1.72.0 r-dbi@1.2.3 r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: http://bioconductor.org
Licenses: GPL 2+
Build system: r
Synopsis: Frozen RMA Tools
Description:

This package provides tools for advanced use of the frma package.

r-flowbeads 1.48.0
Propagated dependencies: r-xtable@1.8-4 r-rrcov@1.7-7 r-knitr@1.50 r-flowcore@2.22.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowBeads
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowBeads: Analysis of flow bead data
Description:

This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.

r-factdesign 1.86.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/factDesign
Licenses: LGPL 2.0+
Build system: r
Synopsis: Factorial designed microarray experiment analysis
Description:

This package provides a set of tools for analyzing data from a factorial designed microarray experiment, or any microarray experiment for which a linear model is appropriate. The functions can be used to evaluate tests of contrast of biological interest and perform single outlier detection.

r-finfomds 1.0.0
Propagated dependencies: r-phyloseq@1.54.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/soob-kim/FinfoMDS
Licenses: GPL 3
Build system: r
Synopsis: Multidimensional Scaling with F-ratio for microbiome visualization
Description:

F-informed MDS is a new multidimensional scaling-based ordination method that configures data distribution based on the F-statistic (i.e., the ratio of dispersion between groups with shared or differing labels).

r-furrowseg 1.38.0
Propagated dependencies: r-tiff@0.1-12 r-locfit@1.5-9.12 r-ebimage@4.52.0 r-dplyr@1.1.4 r-abind@1.4-8
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/furrowSeg
Licenses: Artistic License 2.0
Build system: r
Synopsis: Furrow Segmentation
Description:

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

r-flowtime 1.34.0
Propagated dependencies: r-tibble@3.3.0 r-rlang@1.1.6 r-plyr@1.8.9 r-magrittr@2.0.4 r-flowcore@2.22.0 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowTime
Licenses: Artistic License 2.0
Build system: r
Synopsis: Annotation and analysis of biological dynamical systems using flow cytometry
Description:

This package facilitates analysis of both timecourse and steady state flow cytometry experiments. This package was originially developed for quantifying the function of gene regulatory networks in yeast (strain W303) expressing fluorescent reporter proteins using BD Accuri C6 and SORP cytometers. However, the functions are for the most part general and may be adapted for analysis of other organisms using other flow cytometers. Functions in this package facilitate the annotation of flow cytometry data with experimental metadata, as often required for publication and general ease-of-reuse. Functions for creating, saving and loading gate sets are also included. In the past, we have typically generated summary statistics for each flowset for each timepoint and then annotated and analyzed these summary statistics. This method loses a great deal of the power that comes from the large amounts of individual cell data generated in flow cytometry, by essentially collapsing this data into a bulk measurement after subsetting. In addition to these summary functions, this package also contains functions to facilitate annotation and analysis of steady-state or time-lapse data utilizing all of the data collected from the thousands of individual cells in each sample.

r-featseekr 1.10.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-pracma@2.4.6 r-pheatmap@1.0.13 r-mass@7.3-65
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/tcapraz/FeatSeekR
Licenses: GPL 3
Build system: r
Synopsis: FeatSeekR an R package for unsupervised feature selection
Description:

FeatSeekR performs unsupervised feature selection using replicated measurements. It iteratively selects features with the highest reproducibility across replicates, after projecting out those dimensions from the data that are spanned by the previously selected features. The selected a set of features has a high replicate reproducibility and a high degree of uniqueness.

r-famagg 1.38.0
Propagated dependencies: r-survey@4.4-8 r-matrix@1.7-4 r-kinship2@1.9.6.2 r-igraph@2.2.1 r-gap@1.6 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/EuracBiomedicalResearch/FamAgg
Licenses: Expat
Build system: r
Synopsis: Pedigree Analysis and Familial Aggregation
Description:

Framework providing basic pedigree analysis and plotting utilities as well as a variety of methods to evaluate familial aggregation of traits in large pedigrees.

r-frmaexampledata 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/frmaExampleData
Licenses: GPL 2+
Build system: r
Synopsis: Frma Example Data
Description:

Data files used by the examples in frma and frmaTools packages.

r-flowpeaks 1.56.0
Dependencies: gsl@2.8 gsl@2.8
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPeaks
Licenses: FSDG-compatible
Build system: r
Synopsis: An R package for flow data clustering
Description:

This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

r-flowclean 1.48.0
Propagated dependencies: r-sfsmisc@1.1-23 r-flowcore@2.22.0 r-changepoint@2.3 r-bit@4.6.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowClean
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowClean
Description:

This package provides a quality control tool for flow cytometry data based on compositional data analysis.

r-fusesom 1.12.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-s4vectors@0.48.0 r-rcpp@1.1.0 r-psych@2.5.6 r-proxy@0.4-27 r-pheatmap@1.0.13 r-ggpubr@0.6.2 r-ggplotify@0.1.3 r-ggplot2@4.0.1 r-fpc@2.2-13 r-fcps@1.3.5 r-fastcluster@1.3.0 r-diptest@0.77-2 r-coop@0.6-3 r-cluster@2.1.8.1 r-analogue@0.18.1
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FuseSOM
Licenses: GPL 2
Build system: r
Synopsis: Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets
Description:

This package provides a correlation-based multiview self-organizing map for the characterization of cell types in highly multiplexed in situ imaging cytometry assays (`FuseSOM`) is a tool for unsupervised clustering. `FuseSOM` is robust and achieves high accuracy by combining a `Self Organizing Map` architecture and a `Multiview` integration of correlation based metrics. This allows FuseSOM to cluster highly multiplexed in situ imaging cytometry assays.

r-fishalyser 1.44.0
Propagated dependencies: r-ebimage@4.52.0 r-abind@1.4-8
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FISHalyseR
Licenses: Artistic License 2.0
Build system: r
Synopsis: FISHalyseR a package for automated FISH quantification
Description:

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

r-flowplots 1.58.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPlots
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowPlots: analysis plots and data class for gated flow cytometry data
Description:

Graphical displays with embedded statistical tests for gated ICS flow cytometry data, and a data class which stores "stacked" data and has methods for computing summary measures on stacked data, such as marginal and polyfunctional degree data.

r-genomautomorphism 1.12.0
Propagated dependencies: r-xvector@0.50.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-numbers@0.9-2 r-matrixstats@1.5.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17 r-data-table@1.17.8 r-biostrings@2.78.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://github.com/genomaths/GenomAutomorphism
Licenses: Artistic License 2.0
Build system: r
Synopsis: Compute the automorphisms between DNA's Abelian group representations
Description:

This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.

r-ga4ghclient 1.34.0
Propagated dependencies: r-variantannotation@1.56.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-jsonlite@2.0.0 r-iranges@2.44.0 r-httr@1.4.7 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-biostrings@2.78.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://github.com/labbcb/GA4GHclient
Licenses: GPL 2+
Build system: r
Synopsis: Bioconductor package for accessing GA4GH API data servers
Description:

GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

r-gcapc 1.34.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-matrixstats@1.5.0 r-mass@7.3-65 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicalignments@1.46.0 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://github.com/tengmx/gcapc
Licenses: GPL 3
Build system: r
Synopsis: GC Aware Peak Caller
Description:

Peak calling for ChIP-seq data with consideration of potential GC bias in sequencing reads. GC bias is first estimated with generalized linear mixture models using effective GC strategy, then applied into peak significance estimation.

r-ggkegg 1.8.0
Propagated dependencies: r-xml@3.99-0.20 r-tidygraph@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-shadowtext@0.1.6 r-patchwork@1.3.2 r-magick@2.9.0 r-igraph@2.2.1 r-gtable@0.3.6 r-ggraph@2.2.2 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-data-table@1.17.8 r-biocfilecache@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://github.com/noriakis/ggkegg
Licenses: Expat
Build system: r
Synopsis: Analyzing and visualizing KEGG information using the grammar of graphics
Description:

This package aims to import, parse, and analyze KEGG data such as KEGG PATHWAY and KEGG MODULE. The package supports visualizing KEGG information using ggplot2 and ggraph through using the grammar of graphics. The package enables the direct visualization of the results from various omics analysis packages.

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Total results: 68655