_            _    _        _         _
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      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-futile-options 1.0.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/futile.options
Licenses: LGPL 3+
Synopsis: Options management framework
Description:

The futile.options subsystem provides an easy user-defined options management system that is properly scoped. This means that options created via futile.options are fully self-contained and will not collide with options defined in other packages.

r-model4you 0.9-8
Propagated dependencies: r-formula@1.2-5 r-ggplot2@3.5.2 r-gridextra@2.3 r-partykit@1.2-24 r-sandwich@3.1-1 r-survival@3.8-3
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/model4you/
Licenses: GPL 2+
Synopsis: Stratified and personalised models based on trees and forests
Description:

This package provides procedures for model-based trees for subgroup analyses in clinical trials and model-based forests for the estimation and prediction of personalised treatment effects. Currently partitioning of linear models, lm(), generalised linear models, glm(), and Weibull models, survreg(), are supported. Advanced plotting functionality is supported for the trees and a test for parameter heterogeneity is provided for the personalised models.

r-fontliberation 0.1.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=fontLiberation
Licenses: SIL OFL 1.1
Synopsis: Liberation fonts
Description:

This package provides a placeholder for the Liberation fontset intended for the fontquiver package. This fontset covers the 12 combinations of families (sans, serif, mono) and faces (plain, bold, italic, bold italic) supported in R graphics devices.

r-rtweet 2.0.0
Propagated dependencies: r-bit64@4.6.0-1 r-curl@6.2.3 r-httr@1.4.7 r-httr2@1.1.2 r-jsonlite@2.0.0 r-lifecycle@1.0.4 r-progress@1.2.3 r-rlang@1.1.6 r-tibble@3.2.1 r-withr@3.0.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://docs.ropensci.org/rtweet/
Licenses: Expat
Synopsis: Collect Twitter data
Description:

This package implements tools designed to collect and organize Twitter data via Twitter's REST and stream Application Program Interfaces (API).

r-dfidx 0.1-0
Propagated dependencies: r-dplyr@1.1.4 r-formula@1.2-5 r-glue@1.8.0 r-pillar@1.10.2 r-rdpack@2.6.4 r-tidyselect@1.2.1 r-vctrs@0.6.5
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=dfidx
Licenses: GPL 2+
Synopsis: Indexed data frames
Description:

This package provides extended data frames, with a special data frame column which contains two indexes, with potentially a nesting structure.

r-xopen 1.0.1
Propagated dependencies: r-processx@3.8.6
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/r-lib/xopen#readme
Licenses: Expat
Synopsis: Open system files, URLs, anything
Description:

This package provides a cross-platform solution to open files, directories or URLs with their associated programs.

r-assertive-base 0.0-9
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://bitbucket.org/richierocks/assertive.base
Licenses: GPL 3+
Synopsis: Core of the assertive package
Description:

This package provides a minimal set of predicates and assertions used by the assertive package. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

r-ordinal 2023.12-4.1
Propagated dependencies: r-mass@7.3-65 r-matrix@1.7-3 r-nlme@3.1-168 r-numderiv@2016.8-1.1 r-ucminf@1.2.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/runehaubo/ordinal
Licenses: GPL 2+
Synopsis: Regression models for ordinal data
Description:

This package provides an implementation of cumulative link (mixed) models also known as ordered regression models, proportional odds models, proportional hazards models for grouped survival times and ordered models. Estimation is via maximum likelihood and mixed models are fitted with the Laplace approximation and adaptive Gauss-Hermite quadrature.

r-blockfest 2.0
Propagated dependencies: r-basix@1.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/BlockFeST/
Licenses: GPL 2
Synopsis: Bayesian calculation of region-specific fixation index
Description:

This package provides an R implementation of an extension of the BayeScan software for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.

r-caliberrfimpute 1.0-7
Propagated dependencies: r-mice@3.18.0 r-mvtnorm@1.3-3 r-randomforest@4.7-1.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=CALIBERrfimpute
Licenses: GPL 3
Synopsis: Multiple imputation using MICE and random forest
Description:

This package provides functions to impute using random forest. It operates under full conditional specifications (multivariate imputation by chained equations).

r-broom-helpers 1.21.0
Propagated dependencies: r-broom@1.0.8 r-cards@0.6.0 r-cli@3.6.5 r-dplyr@1.1.4 r-labelled@2.14.1 r-lifecycle@1.0.4 r-purrr@1.0.4 r-rlang@1.1.6 r-stringr@1.5.1 r-tibble@3.2.1 r-tidyr@1.3.1 r-tidyselect@1.2.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://larmarange.github.io/broom.helpers/
Licenses: GPL 3+
Synopsis: Helpers for Model Coefficients Tibbles
Description:

This package provides suite of functions to work with regression model broom::tidy() tibbles. The suite includes functions to group regression model terms by variable, insert reference and header rows for categorical variables, add variable labels, and more.

r-rcppde 0.1.8
Propagated dependencies: r-rcpp@1.0.14 r-rcpparmadillo@14.4.3-1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=RcppDE
Licenses: GPL 2+
Synopsis: Global optimization by differential evolution in C++
Description:

This package provides an iteration of the DEoptim function. It performs global optimization by differential evolution.

r-plot3d 1.4.1
Propagated dependencies: r-misc3d@0.9-1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/plot3D
Licenses: GPL 3+
Synopsis: Plot multi-dimensional data
Description:

This package provides functions for viewing 2D and 3D data, including perspective plots, slice plots, surface plots, scatter plots, etc. It includes data sets from oceanography.

r-later 1.4.2
Propagated dependencies: r-rcpp@1.0.14 r-rlang@1.1.6
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/r-lib/later
Licenses: GPL 2+
Synopsis: Utilities for delaying function execution
Description:

This package provides tools to execute arbitrary R or C functions some time after the current time, after the R execution stack has emptied.

r-hardhat 1.4.1
Propagated dependencies: r-cli@3.6.5 r-glue@1.8.0 r-rlang@1.1.6 r-sparsevctrs@0.3.4 r-tibble@3.2.1 r-vctrs@0.6.5
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/tidymodels/hardhat
Licenses: Expat
Synopsis: Construct modeling packages
Description:

Building modeling packages is hard. A large amount of effort generally goes into providing an implementation for a new method that is efficient, fast, and correct, but often less emphasis is put on the user interface. A good interface requires specialized knowledge about S3 methods and formulas, which the average package developer might not have. The goal of hardhat is to reduce the burden around building new modeling packages by providing functionality for preprocessing, predicting, and validating input.

r-icge 0.4.2
Propagated dependencies: r-cluster@2.1.8.1 r-fastcluster@1.3.0 r-mass@7.3-65
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/ICGE/
Licenses: GPL 2+
Synopsis: Cluster estimation and identification of atypical units
Description:

ICGE is a package that helps to estimate the number of real clusters in data as well as to identify atypical units. The underlying methods are based on distances rather than on unit x variables.

r-vipor 0.4.7
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/vipor
Licenses: GPL 2+
Synopsis: Plot categorical data using noise and density estimates
Description:

This package provides tools to generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom noise.

r-foreach 1.5.2
Propagated dependencies: r-codetools@0.2-20 r-iterators@1.0.14
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/foreach
Licenses: ASL 2.0
Synopsis: Foreach looping construct for R
Description:

This package provides support for the foreach looping construct. foreach is an idiom that allows for iterating over elements in a collection, without the use of an explicit loop counter. This package in particular is intended to be used for its return value, rather than for its side effects. In that sense, it is similar to the standard lapply function, but doesn't require the evaluation of a function. Using foreach without side effects also facilitates executing the loop in parallel.

r-isoband 0.2.7
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/wilkelab/isoband
Licenses: Expat
Synopsis: Generate isolines and isobands from regularly spaced elevation grids
Description:

This package provides a fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.

r-dint 2.1.5
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/s-fleck/dint
Licenses: Expat
Synopsis: Toolkit for year-quarter, year-month and year-isoweek dates
Description:

This package provides S3 classes and methods to create and work with year-quarter, year-month and year-isoweek vectors. Basic arithmetic operations (such as adding and subtracting) are supported, as well as formatting and converting to and from standard R date types.

r-rapiclient 0.1.8
Propagated dependencies: r-httr@1.4.7 r-jsonlite@2.0.0 r-yaml@2.3.10
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/bergant/rapiclient
Licenses: Expat
Synopsis: Dynamic OpenAPI/Swagger client
Description:

This package lets you access services specified in OpenAPI (formerly Swagger) format. It is not a code generator. The client is generated dynamically as a list of R functions.

r-gunifrac 1.8
Propagated dependencies: r-ape@5.8-1 r-dirmult@0.1.3-5 r-foreach@1.5.2 r-ggplot2@3.5.2 r-ggrepel@0.9.6 r-inline@0.3.21 r-mass@7.3-65 r-matrix@1.7-3 r-matrixstats@1.5.0 r-modeest@2.4.0 r-rcpp@1.0.14 r-rmutil@1.1.10 r-statmod@1.5.0 r-vegan@2.6-10
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=GUniFrac
Licenses: GPL 3
Synopsis: Generalized UniFrac distances and methods for microbiome data analysis
Description:

This package provides a suite of methods for powerful and robust microbiome data analysis, including data normalization, data simulation, community-level association testing and differential abundance analysis. It implements generalized UniFrac distances, Geometric Mean of Pairwise Ratios (GMPR) normalization, semiparametric data simulator, distance-based statistical methods, and feature- based statistical methods. The distance-based statistical methods include three extensions of PERMANOVA:

  • PERMANOVA using the Freedman-Lane permutation scheme,

  • PERMANOVA omnibus test using multiple matrices, and

  • analytical approach to approximating PERMANOVA p-value.

Feature-based statistical methods include linear model-based methods for differential abundance analysis of zero-inflated high-dimensional compositional data.

r-bestnormalize 1.9.1
Propagated dependencies: r-butcher@0.3.5 r-doparallel@1.0.17 r-dorng@1.8.6.2 r-dplyr@1.1.4 r-foreach@1.5.2 r-generics@0.1.4 r-lambertw@0.6.9-1 r-nortest@1.0-4 r-purrr@1.0.4 r-recipes@1.3.1 r-tibble@3.2.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://petersonr.github.io/bestNormalize/
Licenses: GPL 3
Synopsis: Normalizing transformation functions
Description:

Estimate a suite of normalizing transformations, including a new adaptation of a technique based on ranks which can guarantee normally distributed transformed data if there are no ties: ordered quantile normalization (ORQ). ORQ normalization combines a rank-mapping approach with a shifted logit approximation that allows the transformation to work on data outside the original domain. It is also able to handle new data within the original domain via linear interpolation. The package is built to estimate the best normalizing transformation for a vector consistently and accurately. It implements the Box-Cox transformation, the Yeo-Johnson transformation, three types of Lambert WxF transformations, and the ordered quantile normalization transformation. It estimates the normalization efficacy of other commonly used transformations, and it allows users to specify custom transformations or normalization statistics. Finally, functionality can be integrated into a machine learning workflow via recipes.

r-rcppgsl 0.3.13
Propagated dependencies: r-rcpp@1.0.14 gsl@2.8
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/RcppGSL/
Licenses: GPL 2+
Synopsis: Rcpp integration for GSL vectors and matrices
Description:

The GNU Scientific Library (or GSL) is a collection of numerical routines for scientific computing. It is particularly useful for C and C++ programs as it provides a standard C interface to a wide range of mathematical routines. There are over 1000 functions in total with an extensive test suite. The RcppGSL package provides an easy-to-use interface between GSL data structures and R using concepts from Rcpp which is itself a package that eases the interfaces between R and C++.

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