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Three steps variable selection procedure based on random forests. Initially developed to handle high dimensional data (for which number of variables largely exceeds number of observations), the package is very versatile and can treat most dimensions of data, for regression and supervised classification problems. First step is dedicated to eliminate irrelevant variables from the dataset. Second step aims to select all variables related to the response for interpretation purpose. Third step refines the selection by eliminating redundancy in the set of variables selected by the second step, for prediction purpose. Genuer, R. Poggi, J.-M. and Tuleau-Malot, C. (2015) <https://journal.r-project.org/articles/RJ-2015-018/>.
Calculate and plot Venn diagrams in 2D and 3D.
Implementation of a Monte Carlo simulation engine for valuing synthetic portfolios of variable annuities, which reflect realistic features of common annuity contracts in practice. It aims to facilitate the development and dissemination of research related to the efficient valuation of a portfolio of large variable annuities. The main valuation methodology was proposed by Gan (2017) <doi:10.1515/demo-2017-0021>.
Calculates voter transitions comparing two elections, using the function solve.QP() in package quadprog'.
RcppArmadillo implementation for the Matlab code of the Variational Mode Decomposition and Two-Dimensional Variational Mode Decomposition'. For more information, see (i) Variational Mode Decomposition by K. Dragomiretskiy and D. Zosso in IEEE Transactions on Signal Processing, vol. 62, no. 3, pp. 531-544, Feb.1, 2014, <doi:10.1109/TSP.2013.2288675>; (ii) Two-Dimensional Variational Mode Decomposition by Dragomiretskiy, K., Zosso, D. (2015), In: Tai, XC., Bae, E., Chan, T.F., Lysaker, M. (eds) Energy Minimization Methods in Computer Vision and Pattern Recognition. EMMCVPR 2015. Lecture Notes in Computer Science, vol 8932. Springer, <doi:10.1007/978-3-319-14612-6_15>.
This package provides a reference implementation of the Vertical Weighted Strips method explored by Raim, Livsey, and Irimata (2025) <doi:10.48550/arXiv.2401.09696> for rejection sampling.
Offers a core selection of interactivity-first shiny modules for many plot types meant to serve as flexible building blocks for applications and as the base for more complex modules. These modules allow for the rapid and convenient construction of shiny apps with very few lines of code and decouple plotting from the underlying data. These modules allow for full plot aesthetic customization by the end user through UI inputs. Utility functions for simple UI organization, automated UI tooltips, and additional plot enhancements are also provided. Includes a multi-panel figure builder app for arranging multiple modules together in a free-form layout.
Fits variance-guided linear regression models that provide an alternative to ordinary least squares (OLS) for general linear-model design matrices, including ANOVA-style encodings. The methods use an iteratively reweighted least squares estimator or an iteratively reweighted lasso estimator and implement the global linear mean-variance model from the associated 2026 Statistics in Medicine article <doi:10.1002/sim.70632>. Under the assumptions in that paper, the estimator matches the homoscedastic baseline in population predictive quasi-risk when variance is constant and improves on it when the variance depends on covariates. The grouping-based nonlinear prediction extension from Section 3 is available in the development version on GitHub.
Uses large language models to create poems about R packages. Currently contains the roses() function to make "roses are red, ..." style poems and the prompt() function to only assemble the prompt without submitting it to the model.
Although model selection is ubiquitous in scientific discovery, the stability and uncertainty of the selected model is often hard to evaluate. How to characterize the random behavior of the model selection procedure is the key to understand and quantify the model selection uncertainty. This R package offers several graphical tools to visualize the distribution of the selected model. For example, Gplot(), Hplot(), VDSM_scatterplot() and VDSM_heatmap(). To the best of our knowledge, this is the first attempt to visualize such a distribution. About what distribution of selected model is and how it work please see Qin,Y.and Wang,L. (2021) "Visualization of Model Selection Uncertainty" <https://homepages.uc.edu/~qinyn/VDSM/VDSM.html>.
This package provides a way of visualizing collections of time series and, optionally their future values, forecasts for their future values and prediction intervals for the forecasts. A web-based GUI can be used to display the information in a collection of time series.
Declarative template-based framework for verifying that objects meet structural requirements, and auto-composing error messages when they do not.
Streams and parses variant call format file headers without reading full files. Provides structured metadata, validation, inference, and HTML reporting. For details on the specifications used see Danecek et al. (2021) <doi:10.1093/gigascience/giab008>.
This package provides tools for 3D point cloud voxelisation, projection, geometrical and morphological description of trees (DBH, height, volume, crown diameter), analyses of temporal changes between different measurement times, distance based clustering and visualisation of 3D voxel clouds and 2D projection. Most analyses and algorithms provided in the package are based on the concept of space exploration and are described in Lecigne et al. (2018, <doi:10.1093/aob/mcx095>).
Visualizes vowel variation in f0, F1, F2, F3 and duration.
Collects tweets and metadata for threaded conversations and generates networks.
Visualize and compute percentiles/probabilities of normal, t, f, chi square and binomial distributions.
This package provides a shiny dashboard and plotting utilities to explore and report VALD ForceDecks testing data. Includes interactive modules for metric exploration, radar charts, longitudinal comparisons, quadrant plots, and athlete reports.
Wrapper around the City of Vancouver Open Data API <https://opendata.vancouver.ca/api/v2/console> to simplify and standardize access to City of Vancouver open data. Functionality to list the data catalogue and access data and geographic records.
Data version management on the file system for smaller projects. Manage data pipeline outputs with symbolic folder links, structured logging and reports, using R6 classes for encapsulation and data.table for speed. Directory-specific logs used as source of truth to allow portability of versioned data folders.
This package provides a collection of statistical tests for martingale difference hypothesis, including automatic portmanteau test (Escansiano and Lobato, 2009) <doi:10.1016/j.jeconom.2009.03.001> and automatic variance ratio test (Kim, 2009) <doi:10.1016/j.frl.2009.04.003>.
Implementation of the variable banding procedure for modeling local dependence and estimating precision matrices that is introduced in Yu & Bien (2016) and is available at <https://arxiv.org/abs/1604.07451>.
Converts Vietnam's provinces names and ID across different formats. Handles diacritics and different spellings.
By creating crowd-sourcing tasks that can be easily posted and results retrieved using Amazon's Mechanical Turk (MTurk) API, researchers can use this solution to validate the quality of topics obtained from unsupervised or semi-supervised learning methods, and the relevance of topic labels assigned. This helps ensure that the topic modeling results are accurate and useful for research purposes. See Ying and others (2022) <doi:10.1101/2023.05.02.538599>. For more information, please visit <https://github.com/Triads-Developer/Topic_Model_Validation>.