The r-phylogram package is a tool for for developing phylogenetic trees as deeply-nested lists known as "dendrogram" objects. It provides functions for conversion between "dendrogram" and "phylo" class objects, as well as several tools for command-line tree manipulation and import/export via Newick parenthetic text. This improves accessibility to the comprehensive range of object-specific analytical and tree-visualization functions found across a wide array of bioinformatic R packages.

This package offers methods for estimating statistical changes in time series. These are used for identifying nearby critical transitions.

Tidygeocoder makes getting data from geocoding services easy. A unified high-level interface is provided for a selection of supported geocoding services and results are returned in tibble format.

This is a package for maximum likelihood estimation of censored regression (Tobit) models with cross-sectional and panel data.

The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.

This package is a collection of data analysis tools. It includes tools for regression outlier detection in a fitted linear model, stationary bootstrap using a truncated geometric distribution, a comprehensive test for weak stationarity, column means by group, weighted biplots, and a heuristic to obtain a better initial configuration in non-metric MDS.

This package provides functions that:

1. find the minimum/maximum of a linear or quadratic function,

2. sample an underdetermined or overdetermined system,

3. solve a linear system Ax=B for the unknown x.

It includes banded and tridiagonal linear systems. The package calls Fortran functions from LINPACK.

This package provides a helper that tests DBI back ends for conformity to the interface.

int64 values can be created and accessed via the bit64 package and its integer64 class which package the int64 representation cleverly into a double. The nanotime package builds on this to support nanosecond-resolution timestamps. This package helps conversions between R and C++ via several helper functions provided via a single header file. A complete example client package is included as an illustration.

This package implements various estimators of entropy, such as the shrinkage estimator by Hausser and Strimmer, the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, and the Chao-Shen estimator. It also offers an R interface to the NSB estimator. Furthermore, it provides functions for estimating Kullback-Leibler divergence, chi-squared, mutual information, and chi-squared statistic of independence. In addition there are functions for discretizing continuous random variables.

Users may want to align plots with associated information that requires axes to be exactly matched in subplots, e.g. hierarchical clustering with a heatmap. This package provides utilities to align associated subplots to a main plot at different sides (left, right, top and bottom) with axes exactly matched.

This package lets you construct Clinical Data Interchange Standards Consortium (CDISC) compliant Analysis Results Data objects. These objects are used and re-used to construct summary tables, visualizations, and written reports. The package also exports utilities for working with these objects and creating new Analysis Results Data objects.

This package provides linear models based on Theil-Sen single median and Siegel repeated medians. They are very robust (29 or 50 percent breakdown point, respectively), and if no outliers are present, the estimators are very similar to OLS.

Unlike other tools that dynamically link to the Cairo stack, freetypeharfbuzz is statically linked to specific versions of the FreeType and harfbuzz libraries. This ensures deterministic computation of text box extents for situations where reproducible results are crucial (for instance unit tests of graphics).

Sending functions to remote processes can be wasteful of resources because they carry their environments with them. With this package, it is easy to create functions that are isolated from their environment. These isolated functions, also called crates, print to the console with their total size and can be easily tested locally before being sent to a remote.

This package provides the means to plot ggplot2 graphs in the style of the XKCD web comic.

Asio is a cross-platform C++ library for network and low-level I/O programming that provides developers with a consistent asynchronous model using a modern C++ approach. It is also included in Boost but requires linking when used with Boost. Standalone it can be used header-only (provided a recent compiler). Asio is written and maintained by Christopher M. Kohlhoff, and released under the Boost Software License', Version 1.0.

This package contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

This package provides an R tool for estimating and partitioning R2 in generalized linear mixed models (GLMMs) based on predictor variance.

This package provides high level functions for parallel programming with Rcpp. For example, the parallelFor() function can be used to convert the work of a standard serial for loop into a parallel one and the parallelReduce() function can be used for accumulating aggregates or other values.

This is an R package for dimension reduction based on finite Gaussian mixture modeling of inverse regression.

This package provides an R interface to HiGHS, an optimization solver. It is designed for solving mixed-integer optimization problems with quadratic or linear objectives and linear constraints.

This library lets you place an exclusive or shared lock on a file using the appropriate system call provided by the underlying operating system.

This package provides tools to create a lightweight Shiny wrapper for the css-loaders created by Luke Hass https://github.com/lukehaas/css-loaders. Wrapping a Shiny output will automatically show a loader when the output is (re)calculating.