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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-mgu74aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mgu74a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74A\_probe\_tab.

r-mogene20sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene20sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster)
Description:

Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster) assembled using data from public repositories.

r-msstatsqcgui 1.30.0
Propagated dependencies: r-shiny@1.11.1 r-plotly@4.11.0 r-msstatsqc@2.28.0 r-gridextra@2.3 r-ggextra@0.11.0 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://msstats.org/msstatsqc
Licenses: FSDG-compatible
Build system: r
Synopsis: graphical user interface for MSstatsQC package
Description:

MSstatsQCgui is a Shiny app which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

r-m6aboost 1.16.0
Propagated dependencies: r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-experimenthub@3.0.0 r-dplyr@1.1.4 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-adabag@5.1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ZarnackGroup/m6Aboost
Licenses: Artistic License 2.0
Build system: r
Synopsis: m6Aboost
Description:

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

r-mafdb-topmed-freeze5-hg38 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.TOPMed.freeze5.hg38
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from TOPMed for hg38
Description:

Store minor allele frequency data from NHLBI TOPMed for the human genome version hg38.

r-moe430b-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix MOE430B Array annotation data (chip moe430b)
Description:

Affymetrix Affymetrix MOE430B Array annotation data (chip moe430b) assembled using data from public repositories.

r-methreg 1.20.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-tfbstools@1.48.0 r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-sfsmisc@1.1-23 r-sesamedata@1.28.0 r-sesame@1.28.0 r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-rlang@1.1.6 r-readr@2.1.6 r-pscl@1.5.9 r-progress@1.2.3 r-plyr@1.8.9 r-openxlsx@4.2.8.1 r-matrix@1.7-4 r-mass@7.3-65 r-jaspar2024@0.99.7 r-iranges@2.44.0 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-experimenthub@3.0.0 r-dplyr@1.1.4 r-delayedarray@0.36.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MethReg
Licenses: GPL 3
Build system: r
Synopsis: Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
Description:

Epigenome-wide association studies (EWAS) detects a large number of DNA methylation differences, often hundreds of differentially methylated regions and thousands of CpGs, that are significantly associated with a disease, many are located in non-coding regions. Therefore, there is a critical need to better understand the functional impact of these CpG methylations and to further prioritize the significant changes. MethReg is an R package for integrative modeling of DNA methylation, target gene expression and transcription factor binding sites data, to systematically identify and rank functional CpG methylations. MethReg evaluates, prioritizes and annotates CpG sites with high regulatory potential using matched methylation and gene expression data, along with external TF-target interaction databases based on manually curation, ChIP-seq experiments or gene regulatory network analysis.

r-multimir 1.32.0
Propagated dependencies: r-xml@3.99-0.20 r-tibble@3.3.0 r-rcurl@1.98-1.17 r-purrr@1.2.0 r-dplyr@1.1.4 r-biocgenerics@0.56.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/KechrisLab/multiMiR
Licenses: Expat
Build system: r
Synopsis: Integration of multiple microRNA-target databases with their disease and drug associations
Description:

This package provides a collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

r-mspuritydata 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/msPurityData
Licenses: GPL 2+
Build system: r
Synopsis: Fragmentation spectral libraries and data to test the msPurity package
Description:

Fragmentation spectral libraries and data to test the msPurity package.

r-meat 1.22.0
Propagated dependencies: r-watermelon@2.16.0 r-tibble@3.3.0 r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-rpmm@1.25 r-minfi@1.56.0 r-impute@1.84.0 r-glmnet@4.1-10 r-dynamictreecut@1.63-1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/sarah-voisin/MEAT
Licenses: Expat
Build system: r
Synopsis: Muscle Epigenetic Age Test
Description:

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

r-meebodata 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MEEBOdata
Licenses: LGPL 2.0+
Build system: r
Synopsis: MEEBO set and MEEBO controls
Description:

R objects describing the MEEBO set.

r-metaboliteidmapping 1.0.0
Propagated dependencies: r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/yigbt/metaboliteIDmapping
Licenses: GPL 3
Build system: r
Synopsis: Mapping of Metabolite IDs from Different Sources
Description:

The package provides a comprehensive mapping table of nine different Metabolite ID formats and their common name. The data has been collected and merged from four publicly available source, including HMDB, Comptox Dashboard, ChEBI, and the graphite Bioconductor R package.

r-microbiomeexplorer 1.20.0
Propagated dependencies: r-vegan@2.7-2 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-shinywidgets@0.9.0 r-shinyjs@2.1.0 r-shinydashboard@0.7.3 r-shinycssloaders@1.1.0 r-shiny@1.11.1 r-rmarkdown@2.30 r-rlang@1.1.6 r-reshape2@1.4.5 r-readr@2.1.6 r-rcolorbrewer@1.1-3 r-purrr@1.2.0 r-plotly@4.11.0 r-metagenomeseq@1.52.0 r-matrixstats@1.5.0 r-magrittr@2.0.4 r-lubridate@1.9.4 r-limma@3.66.0 r-knitr@1.50 r-heatmaply@1.6.0 r-forcats@1.0.1 r-dt@0.34.0 r-dplyr@1.1.4 r-deseq2@1.50.2 r-car@3.1-3 r-broom@1.0.10 r-biomformat@1.38.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/microbiomeExplorer
Licenses: Expat
Build system: r
Synopsis: Microbiome Exploration App
Description:

The MicrobiomeExplorer R package is designed to facilitate the analysis and visualization of marker-gene survey feature data. It allows a user to perform and visualize typical microbiome analytical workflows either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows the application enables automated analysis report generation.

r-mgu74bv2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bv2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mgu74bv2cdf
Description:

This package provides a package containing an environment representing the MG_U74Bv2.CDF file.

r-meshdbi 1.46.0
Propagated dependencies: r-rsqlite@2.4.4 r-biobase@2.70.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MeSHDbi
Licenses: Artistic License 2.0
Build system: r
Synopsis: DBI to construct MeSH-related package from sqlite file
Description:

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

r-mogene21sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene21sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster)
Description:

Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster) assembled using data from public repositories.

r-methylinheritance 1.34.0
Propagated dependencies: r-s4vectors@0.48.0 r-rebus@0.1-3 r-methylkit@1.36.0 r-iranges@2.44.0 r-gridextra@2.3 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/adeschen/methylInheritance
Licenses: Artistic License 2.0
Build system: r
Synopsis: Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
Description:

Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

r-mgfm 1.44.0
Propagated dependencies: r-annotationdbi@1.72.0 r-annotate@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MGFM
Licenses: GPL 3
Build system: r
Synopsis: Marker Gene Finder in Microarray gene expression data
Description:

The package is designed to detect marker genes from Microarray gene expression data sets.

r-magpie 1.10.0
Propagated dependencies: r-tress@1.16.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-rsamtools@2.26.0 r-reshape2@1.4.5 r-rcolorbrewer@1.1-3 r-openxlsx@4.2.8.1 r-matrixstats@1.5.0 r-matrix@1.7-4 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-deseq2@1.50.2 r-biocparallel@1.44.0 r-aod@1.3.3 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/dxd429/magpie
Licenses: Expat
Build system: r
Synopsis: MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation
Description:

This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC, power, and precision under various study design parameters, including but not limited to sample size, sequencing depth, and testing method. It can also output results into .xlsx files or produce corresponding figures of choice.

r-mgu74bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mgu74b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74B\_probe\_tab.

r-meb 1.24.0
Propagated dependencies: r-wrswor@1.2.0 r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-scater@1.38.0 r-edger@4.8.0 r-e1071@1.7-16
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MEB
Licenses: GPL 2
Build system: r
Synopsis: normalization-invariant minimum enclosing ball method to detect differentially expressed genes for RNA-seq and scRNA-seq data
Description:

This package provides a method to identify differential expression genes in the same or different species. Given that non-DE genes have some similarities in features, a scaling-free minimum enclosing ball (SFMEB) model is built to cover those non-DE genes in feature space, then those DE genes, which are enormously different from non-DE genes, being regarded as outliers and rejected outside the ball. The method on this package is described in the article A minimum enclosing ball method to detect differential expression genes for RNA-seq data'. The SFMEB method is extended to the scMEB method that considering two or more potential types of cells or unknown labels scRNA-seq dataset DEGs identification.

r-mu6500subbcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu6500subbcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mu6500subbcdf
Description:

This package provides a package containing an environment representing the Mu6500subB.CDF file.

r-metagxbreast 1.30.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-lattice@0.22-7 r-impute@1.84.0 r-experimenthub@3.0.0 r-biobase@2.70.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MetaGxBreast
Licenses: FSDG-compatible
Build system: r
Synopsis: Transcriptomic Breast Cancer Datasets
Description:

This package provides a collection of Breast Cancer Transcriptomic Datasets that are part of the MetaGxData package compendium.

r-missrows 1.30.0
Propagated dependencies: r-s4vectors@0.48.0 r-plyr@1.8.9 r-multiassayexperiment@1.36.1 r-gtools@3.9.5 r-ggplot2@4.0.1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/missRows
Licenses: Artistic License 2.0
Build system: r
Synopsis: Handling Missing Individuals in Multi-Omics Data Integration
Description:

The missRows package implements the MI-MFA method to deal with missing individuals ('biological units') in multi-omics data integration. The MI-MFA method generates multiple imputed datasets from a Multiple Factor Analysis model, then the yield results are combined in a single consensus solution. The package provides functions for estimating coordinates of individuals and variables, imputing missing individuals, and various diagnostic plots to inspect the pattern of missingness and visualize the uncertainty due to missing values.

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Total results: 68655