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\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-herper 1.20.0
Propagated dependencies: r-withr@3.0.2 r-rjson@0.2.23 r-reticulate@1.44.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/RockefellerUniversity/Herper
Licenses: GPL 3
Build system: r
Synopsis: The Herper package is a simple toolset to install and manage conda packages and environments from R
Description:

Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.

r-hippo 1.22.0
Propagated dependencies: r-umap@0.2.10.0 r-singlecellexperiment@1.32.0 r-rtsne@0.17 r-rlang@1.1.6 r-reshape2@1.4.5 r-matrix@1.7-4 r-magrittr@2.0.4 r-irlba@2.3.5.1 r-gridextra@2.3 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/tk382/HIPPO
Licenses: FSDG-compatible
Build system: r
Synopsis: Heterogeneity-Induced Pre-Processing tOol
Description:

For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering.

r-hmp2data 1.24.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-readr@2.1.6 r-phyloseq@1.54.0 r-multiassayexperiment@1.36.1 r-magrittr@2.0.4 r-knitr@1.50 r-kableextra@1.4.0 r-experimenthub@3.0.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-assertthat@0.2.1 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/jstansfield0/HMP2Data
Licenses: Artistic License 2.0
Build system: r
Synopsis: 16s rRNA sequencing data from the Human Microbiome Project 2
Description:

HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.

r-hicdoc 1.12.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-summarizedexperiment@1.40.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rcpp@1.1.0 r-pbapply@1.7-4 r-multihiccompare@1.28.0 r-interactionset@1.38.0 r-gtools@3.9.5 r-gridextra@2.3 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-data-table@1.17.8 r-cowplot@1.2.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/mzytnicki/HiCDOC
Licenses: LGPL 3
Build system: r
Synopsis: A/B compartment detection and differential analysis
Description:

HiCDOC normalizes intrachromosomal Hi-C matrices, uses unsupervised learning to predict A/B compartments from multiple replicates, and detects significant compartment changes between experiment conditions. It provides a collection of functions assembled into a pipeline to filter and normalize the data, predict the compartments and visualize the results. It accepts several type of data: tabular `.tsv` files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files.

r-htrat230pmcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htrat230pmcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htrat230pmcdf
Description:

This package provides a package containing an environment representing the HT_Rat230_PM.cdf file.

r-htmg430pm-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430pm.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_MG-430_PM Array annotation data (chip htmg430pm)
Description:

Affymetrix Affymetrix HT_MG-430_PM Array annotation data (chip htmg430pm) assembled using data from public repositories.

r-hubmapr 1.4.0
Propagated dependencies: r-whisker@0.4.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-rlang@1.1.6 r-rjsoncons@1.3.2 r-purrr@1.2.0 r-httr2@1.2.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://christinehou11.github.io/HuBMAPR/
Licenses: Artistic License 2.0
Build system: r
Synopsis: Interface to 'HuBMAP'
Description:

HuBMAP provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.

r-hu35ksubacdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubacdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu35ksubacdf
Description:

This package provides a package containing an environment representing the Hu35KsubA.CDF file.

r-htratfocuscdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htratfocuscdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htratfocuscdf
Description:

This package provides a package containing an environment representing the HT_Rat-Focus.cdf file.

r-humanchrloc 2.1.6
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanCHRLOC
Licenses: FSDG-compatible
Build system: r
Synopsis: data package containing annotation data for humanCHRLOC
Description:

Annotation data file for humanCHRLOC assembled using data from public data repositories.

r-help 1.68.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HELP
Licenses: GPL 2+
Build system: r
Synopsis: Tools for HELP data analysis
Description:

The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications.

r-hgu133bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133bcdf
Description:

This package provides a package containing an environment representing the HG-U133B.cdf file.

r-harmonizedtcgadata 1.32.0
Propagated dependencies: r-experimenthub@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HarmonizedTCGAData
Licenses: GPL 3
Build system: r
Synopsis: Processed Harmonized TCGA Data of Five Selected Cancer Types
Description:

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

r-htratfocus-db 3.13.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htratfocus.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus)
Description:

Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus) assembled using data from public repositories.

r-human1mv1ccrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human1mv1cCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata fast genotyping Illumina 1M arrays using the crlmm package.

r-hu35ksubbprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubbprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu35ksubb
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubB\_probe\_tab.

r-hthgu133b-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b)
Description:

Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) assembled using data from public repositories.

r-hvp 1.0.0
Propagated dependencies: r-matrix@1.7-4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HVP
Licenses: Expat
Build system: r
Synopsis: Hierarchical Variance Partitioning
Description:

HVP is a quantitative batch effect metric that estimates the proportion of variance associated with batch effects in a data set.

r-hsagilentdesign026652-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HsAgilentDesign026652.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652)
Description:

Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories.

r-hgu133plus2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133plus2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133\_Plus\_2\_probe\_tab.

r-humancytosnp12v2p1hcrlmm 1.0.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humancytosnp12v2p1hCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina CytoSNP 12 arrays using the crlmm package.

r-hpannot 1.1.1
Propagated dependencies: r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hpAnnot
Licenses: GPL 2
Build system: r
Synopsis: Anotation package for Hipathia package
Description:

Package containing example and annotation data for Hipathia package. Hipathia is a method for the computation of signal transduction along signaling pathways from transcriptomic data. The method is based on an iterative algorithm which is able to compute the signal intensity passing through the nodes of a network by taking into account the level of expression of each gene and the intensity of the signal arriving to it. It also provides a new approach to functional analysis allowing to compute the signal arriving to the functions annotated to each pathway. Hipathia depends on this package to be functional.

r-hcg110probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hcg110
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HC-G110\_probe\_tab.

r-huex10sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/huex10sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix huex10 annotation data (chip huex10sttranscriptcluster)
Description:

Affymetrix huex10 annotation data (chip huex10sttranscriptcluster) assembled using data from public repositories.

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Total results: 68658