_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-piggyback 0.1.5
Propagated dependencies: r-memoise@2.0.1 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-httr@1.4.7 r-glue@1.8.0 r-gh@1.5.0 r-fs@1.6.6 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/ropensci/piggyback
Licenses: GPL 3
Build system: r
Synopsis: Managing Larger Data on a GitHub Repository
Description:

Because larger (> 50 MB) data files cannot easily be committed to git, a different approach is required to manage data associated with an analysis in a GitHub repository. This package provides a simple work-around by allowing larger (up to 2 GB) data files to piggyback on a repository as assets attached to individual GitHub releases. These files are not handled by git in any way, but instead are uploaded, downloaded, or edited directly by calls through the GitHub API. These data files can be versioned manually by creating different releases. This approach works equally well with public or private repositories. Data can be uploaded and downloaded programmatically from scripts. No authentication is required to download data from public repositories.

r-projects 2.1.3
Propagated dependencies: r-zip@2.3.3 r-vctrs@0.6.5 r-tibble@3.3.0 r-stringr@1.6.0 r-sessioninfo@1.2.3 r-rstudioapi@0.17.1 r-rlang@1.1.6 r-readr@2.1.6 r-purrr@1.2.0 r-magrittr@2.0.4 r-lubridate@1.9.4 r-fs@1.6.6 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=projects
Licenses: Expat
Build system: r
Synopsis: Project Infrastructure for Researchers
Description:

This package provides a project infrastructure with a focus on manuscript creation. Creates a project folder with a single command, containing subdirectories for specific components, templates for manuscripts, and so on.

r-phclust 0.1.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PHclust
Licenses: GPL 3
Build system: r
Synopsis: Poisson Hurdle Clustering for Sparse Microbiome Data
Description:

Clustering analysis for sparse microbiome data, based on a Poisson hurdle model.

r-pdsce 1.2.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PDSCE
Licenses: GPL 2
Build system: r
Synopsis: Positive Definite Sparse Covariance Estimators
Description:

Compute and tune some positive definite and sparse covariance estimators.

r-pdqutils 0.1.6
Propagated dependencies: r-orthopolynom@1.0-6.1 r-moments@0.14.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/shabbychef/PDQutils
Licenses: LGPL 3
Build system: r
Synopsis: PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations
Description:

This package provides a collection of tools for approximating the PDQ functions (respectively, the cumulative distribution, density, and quantile) of probability distributions via classical expansions involving moments and cumulants.

r-priorityelasticnet 1.2.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-survival@3.8-3 r-shiny@1.11.1 r-prroc@1.4 r-proc@1.19.0.1 r-plotrix@3.8-13 r-magrittr@2.0.4 r-glmnet@4.1-10 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-cvms@2.0.0 r-checkmate@2.3.3 r-caret@7.0-1 r-broom@1.0.10
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=priorityelasticnet
Licenses: GPL 3
Build system: r
Synopsis: Comprehensive Analysis of Multi-Omics Data Using an Offset-Based Method
Description:

Priority-ElasticNet extends the Priority-LASSO method (Klau et al. (2018) <doi:10.1186/s12859-018-2344-6>) by incorporating the ElasticNet penalty, allowing for both L1 and L2 regularization. This approach fits successive ElasticNet models for several blocks of (omics) data with different priorities, using the predicted values from each block as an offset for the subsequent block. It also offers robust options to handle block-wise missingness in multi-omics data, improving the flexibility and applicability of the model in the presence of incomplete datasets.

r-pushoverr 1.1.0
Propagated dependencies: r-rlang@1.1.6 r-httr@1.4.7 r-glue@1.8.0 r-cli@3.6.5 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://briandconnelly.github.io/pushoverr/
Licenses: FreeBSD
Build system: r
Synopsis: Send Push Notifications using 'Pushover'
Description:

Send push notifications to mobile devices or the desktop using Pushover <https://pushover.net>. These notifications can display things such as results, job status, plots, or any other text or numeric data.

r-pedbp 2.0.3
Propagated dependencies: r-scales@1.4.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/dewittpe/pedbp/
Licenses: GPL 2
Build system: r
Synopsis: Pediatric Blood Pressure
Description:

Data and utilities for estimating pediatric blood pressure percentiles by sex, age, and optionally height (stature) as described in Martin et.al. (2022) <doi:10.1001/jamanetworkopen.2022.36918>. Blood pressure percentiles for children under one year of age come from Gemelli et.al. (1990) <doi:10.1007/BF02171556>. Estimates of blood pressure percentiles for children at least one year of age are informed by data from the National Heart, Lung, and Blood Institute (NHLBI) and the Centers for Disease Control and Prevention (CDC) <doi:10.1542/peds.2009-2107C> or from Lo et.al. (2013) <doi:10.1542/peds.2012-1292>. The flowchart for selecting the informing data source comes from Martin et.al. (2022) <doi:10.1542/hpeds.2021-005998>.

r-protein8k 0.0.2
Propagated dependencies: r-shiny@1.11.1 r-rlang@1.1.6 r-rjson@0.2.23 r-magick@2.9.0 r-lattice@0.22-7 r-gridextra@2.3 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=protein8k
Licenses: CC0
Build system: r
Synopsis: Perform Analysis and Create Visualizations of Proteins
Description:

Read Protein Data Bank (PDB) files, performs its analysis, and presents the result using different visualization types including 3D. The package also has additional capability for handling Virus Report data from the National Center for Biotechnology Information (NCBI) database. Nature Structural Biology 10, 980 (2003) <doi:10.1038/nsb1203-980>. US National Library of Medicine (2021) <https://www.ncbi.nlm.nih.gov/datasets/docs/reference-docs/data-reports/virus/>.

r-piecemeal 0.1.0
Propagated dependencies: r-rlang@1.1.6 r-r6@2.6.1 r-purrr@1.2.0 r-filelock@1.0.3
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=piecemeal
Licenses: GPL 3+
Build system: r
Synopsis: Wrangle Large Simulation Studies
Description:

An R6 class to set up, run, monitor, collate, and debug large simulation studies comprising many small independent replications and treatment configurations. Parallel processing, reproducibility, fault- and error-tolerance, and ability to resume an interrupted or timed-out simulation study are built in.

r-pagwas 2.0
Propagated dependencies: r-mnormt@2.1.1 r-lars@1.3 r-foreach@1.5.2
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PAGWAS
Licenses: GPL 2+
Build system: r
Synopsis: Pathway Analysis Methods for Genomewide Association Data
Description:

Bayesian hierarchical methods for pathway analysis of genomewide association data: Normal/Bayes factors and Sparse Normal/Adaptive lasso. The Frequentist Fisher's product method is included as well.

r-pbrackets 1.0.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pBrackets
Licenses: GPL 3+
Build system: r
Synopsis: Plot Brackets
Description:

Adds different kinds of brackets to a plot, including braces, chevrons, parentheses or square brackets.

r-ptvalue 0.2.0
Propagated dependencies: r-vctrs@0.6.5 r-rlang@1.1.6
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/agkamel/ptvalue
Licenses: Expat
Build system: r
Synopsis: Working with Precision Teaching Values
Description:

An implementation of an S3 class based on a double vector for storing and displaying precision teaching measures, representing a growing or a decaying (multiplicative) change between two frequencies. The main format method allows researchers to display measures (including data.frame) that respect the established conventions in the precision teaching community (i.e., prefixed multiplication or division symbol, displayed number <= 1). Basic multiplication and division methods are allowed and other useful functions are provided for creating, converting or inverting precision teaching measures. For more details, see Pennypacker, Gutierrez and Lindsley (2003, ISBN: 1-881317-13-7).

r-phylogeneticem 1.8.1
Propagated dependencies: r-robustbase@0.99-6 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-plyr@1.8.9 r-matrix@1.7-4 r-mass@7.3-65 r-linselect@1.1.6 r-glmnet@4.1-10 r-gglasso@1.6 r-foreach@1.5.2 r-capushe@1.1.3 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/pbastide/PhylogeneticEM
Licenses: GPL 2+ FSDG-compatible
Build system: r
Synopsis: Automatic Shift Detection using a Phylogenetic EM
Description:

Implementation of the automatic shift detection method for Brownian Motion (BM) or Ornsteinâ Uhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

r-polymigr 0.1.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PolyMigR
Licenses: GPL 3
Build system: r
Synopsis: Analysis of Polyphenol Migration from Packaging Films
Description:

The gradual release of active substances from packaging can enhance food preservation by maintaining high concentrations of polyphenols and antioxidants for a period of 72 hrs. To assess the effectiveness of packaging materials that serve as carriers for antioxidants, it is crucial to model the diffusivity of the active agents. Understanding this diffusivity helps evaluate the packaging's capacity to prolong the shelf life of food items. The process of migration, which encompasses diffusion, dissolution, and reaching equilibrium, facilitates the transfer of low molecular weight compounds from the packaging into food simulants. The rate at which these active compounds are released from the packaging is typically analysed using food simulants under conditions outlined in European food packaging regulations (Ramos et al., 2014).

r-psbcgroup 1.7
Propagated dependencies: r-survival@3.8-3 r-suppdists@1.1-9.9 r-mvtnorm@1.3-3 r-learnbayes@2.15.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=psbcGroup
Licenses: GPL 2+
Build system: r
Synopsis: Penalized Parametric and Semiparametric Bayesian Survival Models with Shrinkage and Grouping Priors
Description:

Algorithms to implement various Bayesian penalized survival regression models including: semiparametric proportional hazards models with lasso priors (Lee et al., Int J Biostat, 2011 <doi:10.2202/1557-4679.1301>) and three other shrinkage and group priors (Lee et al., Stat Anal Data Min, 2015 <doi:10.1002/sam.11266>); parametric accelerated failure time models with group/ordinary lasso prior (Lee et al. Comput Stat Data Anal, 2017 <doi:10.1016/j.csda.2017.02.014>).

r-projectlsa 0.0.8
Propagated dependencies: r-viridislite@0.4.2 r-tidyverse@2.0.0 r-tidyr@1.3.1 r-tidylpa@2.0.2 r-tibble@3.3.0 r-stringr@1.6.0 r-shinywidgets@0.9.0 r-shiny@1.11.1 r-semptools@0.3.2 r-semplot@1.1.7 r-rlang@1.1.6 r-readxl@1.4.5 r-readr@2.1.6 r-purrr@1.2.0 r-psych@2.5.6 r-polca@1.6.0.2 r-plotly@4.11.0 r-mirt@1.45.1 r-mclust@6.1.2 r-lavaan@0.6-20 r-haven@2.5.5 r-glca@1.4.2 r-ggplot2@4.0.1 r-ggiraph@0.9.2 r-dt@0.34.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-colourpicker@1.3.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/hdmeasure/projectLSA
Licenses: Expat
Build system: r
Synopsis: Shiny Application for Latent Structure Analysis with a Graphical User Interface
Description:

This package provides an interactive Shiny-based toolkit for conducting latent structure analyses, including Latent Profile Analysis (LPA), Latent Class Analysis (LCA), Latent Trait Analysis (LTA/IRT), Exploratory Factor Analysis (EFA), Confirmatory Factor Analysis (CFA), and Structural Equation Modeling (SEM). The implementation is grounded in established methodological frameworks: LPA is supported through tidyLPA (Rosenberg et al., 2018) <doi:10.21105/joss.00978>, LCA through poLCA (Linzer & Lewis, 2011) <doi:10.32614/CRAN.package.poLCA> & glca (Kim & Kim, 2024) <doi:10.32614/CRAN.package.glca>, LTA/IRT via mirt (Chalmers, 2012) <doi:10.18637/jss.v048.i06>, and EFA via psych (Revelle, 2025). SEM and CFA functionalities build upon the lavaan framework (Rosseel, 2012) <doi:10.18637/jss.v048.i02>. Users can upload datasets or use built-in examples, fit models, compare fit indices, visualize results, and export outputs without programming.

r-prda 1.0.2
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-pbapply@1.7-4 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://claudiozandonella.github.io/PRDA/
Licenses: GPL 3
Build system: r
Synopsis: Conduct a Prospective or Retrospective Design Analysis
Description:

An implementation of the "Design Analysis" proposed by Gelman and Carlin (2014) <doi:10.1177/1745691614551642>. It combines the evaluation of Power-Analysis with other inferential-risks as Type-M error (i.e. Magnitude) and Type-S error (i.e. Sign). See also Altoè et al. (2020) <doi:10.3389/fpsyg.2019.02893> and Bertoldo et al. (2020) <doi:10.31234/osf.io/q9f86>.

r-pwt9 9.1-0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pwt9
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Penn World Table (Version 9.x)
Description:

The Penn World Table 9.x (<http://www.ggdc.net/pwt/>) provides information on relative levels of income, output, inputs, and productivity for 182 countries between 1950 and 2017.

r-printtree 0.2.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/PrigasG/printtree
Licenses: Expat
Build system: r
Synopsis: Print Directory Trees for R Projects and Folders
Description:

This package provides tools to print a compact, readable directory tree for a folder or project. The package can automatically detect common project roots (e.g., RStudio .Rproj files) and formats output for quick inspection of code and data organization. It supports typical tree customizations such as limiting depth, excluding files using ignore patterns, and producing clean, aligned text output suitable for console use, reports, and reproducible documentation. A snapshot helper can also render the tree output to a PNG image for sharing in issues, teaching material, or project documentation.

r-peiman2 1.0.2
Propagated dependencies: r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-magrittr@2.0.4 r-lifecycle@1.0.4 r-glue@1.8.0 r-ggplot2@4.0.1 r-forcats@1.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PEIMAN2
Licenses: GPL 3+
Build system: r
Synopsis: Post-Translational Modification Enrichment, Integration, and Matching Analysis
Description:

This package provides functions and mined database from UniProt focusing on post-translational modifications to do single enrichment analysis (SEA) and protein set enrichment analysis (PSEA). Payman Nickchi, Uladzislau Vadadokhau, Mehdi Mirzaie, Marc Baumann, Amir Ata Saei, Mohieddin Jafari (2025) <doi:10.1002/pmic.202400238>.

r-plot-matrix 1.6.2
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/sigbertklinke/plot.matrix
Licenses: GPL 3
Build system: r
Synopsis: Visualizes a Matrix as Heatmap
Description:

Visualizes a matrix object plainly as heatmap. It provides S3 functions to plot simple matrices and loading matrices.

r-projections 0.6.1
Propagated dependencies: r-incidence@1.7.6 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://www.repidemicsconsortium.org/projections/
Licenses: Expat
Build system: r
Synopsis: Project Future Case Incidence
Description:

This package provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in EpiEstim or in earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>. The package provides the S3 class projections which extends matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.

r-prism 0.3.0
Propagated dependencies: r-terra@1.8-86 r-stringr@1.6.0 r-readr@2.1.6 r-raster@3.6-32 r-magrittr@2.0.4 r-httr@1.4.7 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://docs.ropensci.org/prism/
Licenses: Expat
Build system: r
Synopsis: Access Data from the Oregon State Prism Climate Project
Description:

Allows users to access the Oregon State Prism climate data (<https://prism.nacse.org/>). Using the web service API data can easily downloaded in bulk and loaded into R for spatial analysis. Some user friendly visualizations are also provided.

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