_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pipeflow 0.2.3
Propagated dependencies: r-r6@2.6.1 r-lgr@0.5.0 r-jsonlite@2.0.0 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://rpahl.github.io/pipeflow/
Licenses: GPL 3
Build system: r
Synopsis: Lightweight, General-Purpose Data Analysis Pipelines
Description:

This package provides a lightweight yet powerful framework for building robust data analysis pipelines. With pipeflow', you initialize a pipeline with your dataset and construct workflows step by step by adding R functions. You can modify, remove, or insert steps and parameters at any stage, while pipeflow ensures the pipeline's integrity. Overall, this package offers a beginner-friendly framework that simplifies and streamlines the development of data analysis pipelines by making them modular, intuitive, and adaptable.

r-pooledpeaks 1.2.2
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-rlang@1.1.6 r-qpdf@1.4.1 r-pdftools@3.6.0 r-magrittr@2.0.4 r-fragman@1.0.9 r-dplyr@1.1.4 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/kmkuesters/pooledpeaks
Licenses: GPL 3+
Build system: r
Synopsis: Genetic Analysis of Pooled Samples
Description:

Analyzing genetic data obtained from pooled samples. This package can read in Fragment Analysis output files, process the data, and score peaks, as well as facilitate various analyses, including cluster analysis, calculation of genetic distances and diversity indices, as well as bootstrap resampling for statistical inference. Specifically tailored to handle genetic data efficiently, researchers can explore population structure, genetic differentiation, and genetic relatedness among samples. We updated some functions from Covarrubias-Pazaran et al. (2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats and referenced the following to write our genetic analysis functions: Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008) <doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973) <doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006) <doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008) <doi:10.1111/j.1541-0420.2008.01010.x>.

r-predictionr 1.0-12
Propagated dependencies: r-renext@3.1-5 r-fitdistrplus@1.2-4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PredictionR
Licenses: GPL 2+
Build system: r
Synopsis: Prediction for Future Data from any Continuous Distribution
Description:

This package provides functions to get prediction intervals and prediction points of future observations from any continuous distribution.

r-ptak 2.0.0
Propagated dependencies: r-tensor@1.5.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://www.GeotRYcs.com
Licenses: GPL 2+
Build system: r
Synopsis: Principal Tensor Analysis on k Modes
Description:

This package provides a multiway method to decompose a tensor (array) of any order, as a generalisation of SVD also supporting non-identity metrics and penalisations. 2-way SVD with these extensions is also available. The package includes also some other multiway methods: PCAn (Tucker-n) and PARAFAC/CANDECOMP with these extensions.

r-penalizedclr 2.0.0
Propagated dependencies: r-survival@3.8-3 r-penalized@0.9-53 r-clogitl1@1.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=penalizedclr
Licenses: Expat
Build system: r
Synopsis: Integrative Penalized Conditional Logistic Regression
Description:

This package implements L1 and L2 penalized conditional logistic regression with penalty factors allowing for integration of multiple data sources. Implements stability selection for variable selection.

r-positron-tutorials 0.2.1
Propagated dependencies: r-usethis@3.2.1 r-tutorial-helpers@0.6.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://ppbds.github.io/positron.tutorials/
Licenses: Expat
Build system: r
Synopsis: Tutorials for Learning 'Positron' and for Using AI
Description:

Collection of tutorials for working with Positron and for learning how to apply generative AI when coding with R. Covers scripts, Quarto documents, Git', GitHub', and Quarto websites. Makes extensive use of the tools in the tutorial.helpers package.

r-peppm 0.0.1
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/fndemarqui/peppm
Licenses: GPL 2+
Build system: r
Synopsis: Piecewise Exponential Distribution with Random Time Grids
Description:

Fits the Piecewise Exponential distribution with random time grids using the clustering structure of the Product Partition Models. Details of the implemented model can be found in Demarqui et al. (2008) <doi:10.1007/s10985-008-9086-0>.

r-puzzle 0.0.1
Propagated dependencies: r-tidyverse@2.0.0 r-sqldf@0.4-11 r-reshape2@1.4.5 r-reshape@0.8.10 r-readxl@1.4.5 r-readr@2.1.6 r-plyr@1.8.9 r-lubridate@1.9.4 r-kableextra@1.4.0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/syneoshealth/puzzle
Licenses: GPL 3
Build system: r
Synopsis: Assembling Data Sets for Non-Linear Mixed Effects Modeling
Description:

To Simplify the time consuming and error prone task of assembling complex data sets for non-linear mixed effects modeling. Users are able to select from different absorption processes such as zero and first order, or a combination of both. Furthermore, data sets containing data from several entities, responses, and covariates can be simultaneously assembled.

r-photogea 1.4.0
Propagated dependencies: r-openxlsx@4.2.8.1 r-lattice@0.22-7 r-dfoptim@2023.1.0 r-deoptim@2.2-8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/eloch216/PhotoGEA
Licenses: Expat
Build system: r
Synopsis: Photosynthetic Gas Exchange Analysis
Description:

Read, process, fit, and analyze photosynthetic gas exchange measurements. Documentation is provided by several vignettes; also see Lochocki, Salesse-Smith, & McGrath (2025) <doi:10.1111/pce.15501>.

r-pathwayvote 0.1.3
Propagated dependencies: r-parallelly@1.45.1 r-harmonicmeanp@3.0.1 r-future@1.68.0 r-furrr@0.3.1 r-clusterprofiler@4.18.2 r-annotationdbi@1.72.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PathwayVote
Licenses: Expat
Build system: r
Synopsis: Robust Pathway Enrichment for DNA Methylation Studies Using Ensemble Voting
Description:

This package performs pathway enrichment analysis using a voting-based framework that integrates CpGâ gene regulatory information from expression quantitative trait methylation (eQTM) data. For a grid of top-ranked CpGs and filtering thresholds, gene sets are generated and refined using an entropy-based pruning strategy that balances information richness, stability, and probe bias correction. In particular, gene lists dominated by genes with disproportionately high numbers of CpG mappings are penalized to mitigate active probe biasâ a common artifact in methylation data analysis. Enrichment results across parameter combinations are then aggregated using a voting scheme, prioritizing pathways that are consistently recovered under diverse settings and robust to parameter perturbations.

r-pwexp 0.5.0
Propagated dependencies: r-survival@3.8-3 r-segmented@2.1-4 r-foreach@1.5.2 r-fastmatch@1.1-6 r-dosnow@1.0.20
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/zjph602xtc/PWEXP
Licenses: Expat
Build system: r
Synopsis: Piecewise Exponential Distribution Prediction Model
Description:

Build piecewise exponential survival model for study design (planning) and event/timeline prediction.

r-pkgdiff 1.0.1
Propagated dependencies: r-rvest@1.0.5 r-crayon@1.5.3 r-cranlogs@2.1.1 r-common@1.1.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://pkgdiff.r-sassy.org
Licenses: CC0
Build system: r
Synopsis: Identifies Package Differences
Description:

Identifies differences between versions of a package. Specifically, the functions help determine if there are breaking changes from one package version to the next. The package also includes a stability assessment, to help you determine the overall stability of a package, or even an entire repository.

r-phenopix 2.4.5
Propagated dependencies: r-zoo@1.8-14 r-terra@1.8-86 r-strucchange@1.5-4 r-stringr@1.6.0 r-sp@2.2-0 r-raster@3.6-32 r-plyr@1.8.9 r-jpeg@0.1-11 r-iterators@1.0.14 r-gtools@3.9.5 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=phenopix
Licenses: GPL 2
Build system: r
Synopsis: Process Digital Images of a Vegetation Cover
Description:

This package provides a collection of functions to process digital images, depict greenness index trajectories and extract relevant phenological stages.

r-pcfam 1.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PCFAM
Licenses: GPL 2
Build system: r
Synopsis: Computation of Ancestry Scores with Mixed Families and Unrelated Individuals
Description:

We provide several algorithms to compute the genotype ancestry scores (such as eigenvector projections) in the case where highly correlated individuals are involved.

r-panelsummary 0.1.2.1
Propagated dependencies: r-tidyselect@1.2.1 r-stringr@1.6.0 r-rlang@1.1.6 r-modelsummary@2.6.0 r-kableextra@1.4.0 r-fixest@0.13.2 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/michaeltopper1/panelsummary
Licenses: GPL 3+
Build system: r
Synopsis: Create Publication-Ready Regression Tables with Panels
Description:

Create an automated regression table that is well-suited for models that are estimated with multiple dependent variables. panelsummary extends modelsummary (Arel-Bundock, V. (2022) <doi:10.18637/jss.v103.i01>) by allowing regression tables to be split into multiple sections with a simple function call. Utilize familiar arguments such as fmt, estimate, statistic, vcov, conf_level, stars, coef_map, coef_omit, coef_rename, gof_map, and gof_omit from modelsummary to clean the table, and additionally, add a row for the mean of the dependent variable without external manipulation.

r-protoclust 1.6.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=protoclust
Licenses: GPL 2
Build system: r
Synopsis: Hierarchical Clustering with Prototypes
Description:

This package performs minimax linkage hierarchical clustering. Every cluster has an associated prototype element that represents that cluster as described in Bien, J., and Tibshirani, R. (2011), "Hierarchical Clustering with Prototypes via Minimax Linkage," The Journal of the American Statistical Association, 106(495), 1075-1084.

r-precast 1.8
Propagated dependencies: r-seurat@5.3.1 r-scater@1.38.0 r-scales@1.4.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-purrr@1.2.0 r-pbapply@1.7-4 r-patchwork@1.3.2 r-mclust@6.1.2 r-matrix@1.7-4 r-mass@7.3-65 r-irlba@2.3.5.1 r-harmony@1.2.4 r-gtools@3.9.5 r-ggthemes@5.1.0 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-dr-sc@3.7 r-dplyr@1.1.4 r-cowplot@1.2.0 r-colorspace@2.1-2
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/feiyoung/PRECAST
Licenses: GPL 3
Build system: r
Synopsis: Embedding and Clustering with Alignment for Spatial Omics Datasets
Description:

An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.

r-pupilpre 0.6.3
Propagated dependencies: r-zoo@1.8-14 r-vwpre@1.2.5 r-tidyr@1.3.1 r-signal@1.8-1 r-shiny@1.11.1 r-robustbase@0.99-6 r-rlang@1.1.6 r-mgcv@1.9-4 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PupilPre
Licenses: GPL 3
Build system: r
Synopsis: Preprocessing Pupil Size Data
Description:

Pupillometric data collected using SR Research Eyelink eye trackers requires significant preprocessing. This package contains functions for preparing pupil dilation data for visualization and statistical analysis. Specifically, it provides a pipeline of functions which aid in data validation, the removal of blinks/artifacts, downsampling, and baselining, among others. Additionally, plotting functions for creating grand average and conditional average plots are provided. See the vignette for samples of the functionality. The package is designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer.

r-postdoc 1.4.2
Propagated dependencies: r-xml2@1.5.0 r-prismjs@2.1.0 r-katex@1.5.0 r-jsonlite@2.0.0 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=postdoc
Licenses: Expat
Build system: r
Synopsis: Minimal and Uncluttered Package Documentation
Description:

Generates simple and beautiful one-page HTML reference manuals with package documentation. Math rendering and syntax highlighting are done server-side in R such that no JavaScript libraries are needed in the browser, which makes the documentation portable and fast to load.

r-pakpc2017 1.0.0
Propagated dependencies: r-magrittr@2.0.4 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/MYaseen208/PakPC2017
Licenses: GPL 2
Build system: r
Synopsis: Pakistan Population Census 2017
Description:

This package provides data sets and functions for exploration of Pakistan Population Census 2017 (<http://www.pbscensus.gov.pk/>).

r-planscorer 0.0.3
Propagated dependencies: r-webshot2@0.1.2 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-sf@1.0-23 r-rlang@1.1.6 r-readr@2.1.6 r-purrr@1.2.0 r-jsonlite@2.0.0 r-httr2@1.2.1 r-fs@1.6.6 r-dplyr@1.1.4 r-curl@7.0.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: http://christophertkenny.com/planscorer/
Licenses: Expat
Build system: r
Synopsis: Score Redistricting Plans with 'PlanScore'
Description:

This package provides access to the PlanScore Application Programming Interface (<https://github.com/PlanScore/PlanScore/blob/main/API.md>) for scoring redistricting plans. Allows for upload of plans from block assignment files and shape files. For shapes in memory, such as from sf or redist', it processes them to save and upload. Includes tools for tidying responses and saving output from the website.

r-polyhaplotyper 1.0.1
Propagated dependencies: r-xml@3.99-0.20
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PolyHaplotyper
Licenses: GPL 2
Build system: r
Synopsis: Assignment of Haplotypes Based on SNP Dosages in Diploids and Polyploids
Description:

Infer the genetic composition of individuals in terms of haplotype dosages for a haploblock, based on bi-allelic marker dosages, for any ploidy level. Reference: Voorrips and Tumino: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data. Submitted to BMC Bioinformatics (2021).

r-pcg 1.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pcg
Licenses: GPL 2+
Build system: r
Synopsis: Preconditioned Conjugate Gradient Algorithm for solving Ax=b
Description:

The package solves linear system of equations Ax=b by using Preconditioned Conjugate Gradient Algorithm where A is real symmetric positive definite matrix. A suitable preconditioner matrix may be provided by user. This can also be used to minimize quadratic function (x'Ax)/2-bx for unknown x.

r-paleots 0.6.2
Propagated dependencies: r-mnormt@2.1.1 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=paleoTS
Licenses: GPL 3
Build system: r
Synopsis: Analyze Paleontological Time-Series
Description:

Facilitates analysis of paleontological sequences of trait values. Functions are provided to fit, using maximum likelihood, simple evolutionary models (including unbiased random walks, directional evolution,stasis, Ornstein-Uhlenbeck, covariate-tracking) and complex models (punctuation, mode shifts).

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Total results: 69112