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Nautilus is an pure-Python package for Bayesian posterior and evidence estimation. It utilizes importance sampling and efficient space exploration using neural networks. Compared to traditional MCMC and Nested Sampling codes, it often needs fewer likelihood calls and produces much larger posterior samples. Additionally, nautilus is highly accurate and produces Bayesian evidence estimates with percent precision. It is widely used in many areas of astrophysical research.
This package provides functions to read flat or tabular text files from disk (or a connection).
This package provides a toolbox for working with base types, core R features like the condition system, and core Tidyverse features like tidy evaluation.
This package provides a library for Probabilistic Graphical Models. It can be used for learning (Structure and Parameter), inference (Probabilistic and Causal), and simulations in Bayesian Networks.
This package performs KDE operations on multidimensional data to calculate estimated PDFs (probability distribution functions), and resample new data from those PDFs.
This package provides a unit testing system for R designed to be fun, flexible and easy to set up.
Radian is an alternative console for the R program with multiline editing and rich syntax highlight. One would consider Radian as a IPython clone for R, though its design is more aligned to Julia.
This package provides a collection of algorithms and functions to aid statistical modeling. It includes growth curve comparisons, limiting dilution analysis (aka ELDA), mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. It also includes advanced generalized linear model functions that implement secure convergence, dispersion modeling and Tweedie power-law families.
This Python package can be used to read and write SAS, SPSS and Stata files into/from Pandas DataFrames. It is a wrapper around the C library readstat.
This package enables survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression.
Rapid, simulation-based exact (restricted) likelihood ratio tests for testing the presence of variance components/nonparametric terms for models fit with nlme::lme(), lme4::lmer(), lmeTest::lmer(), gamm4::gamm4(), mgcv::gamm() and SemiPar::spm().
Emacs Speaks Statistics (ESS) is an add-on package for GNU Emacs. It is designed to support editing of scripts and interaction with various statistical analysis programs such as R, Julia, and JAGS.
George is a fast and flexible Python library for Gaussian Process (GP) Regression, focused on efficiently evaluating the marginalized likelihood of a dataset under a GP prior, even as this dataset gets Big.
PyMC (formerly PyMC3) is a Python package for Bayesian statistical modeling focusing on advanced Markov chain Monte Carlo (MCMC) and variational inference (VI) algorithms.
The package allows one to compose general HTTP requests and provides convenient functions to fetch URIs, GET and POST forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
This package provides an implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion.
This package provides an integration of Eigen in R using a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems.
The snow package provides support for simple parallel computing on a network of workstations using R. A master R process calls makeCluster to start a cluster of worker processes; the master process then uses functions such as clusterCall and clusterApply to execute R code on the worker processes and collect and return the results on the master.
The R6 package allows the creation of classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.
Vega-Altair is a declarative statistical visualization library for Python.
This package provides an implementation of Nested Sampling algorithms for evaluating Bayesian evidence.
ArviZ is a Python package for exploratory analysis of Bayesian models. It includes functions for posterior analysis, data storage, model checking, comparison and diagnostics.
This package displays a progress bar in the R console for long running computations taking place in C++ code, and support for interrupting those computations even in multithreaded code, typically using OpenMP.
This package provides useful utilities from Seminar fuer Statistik ETH Zurich, including many that are related to graphics.