_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-gaia 1.0
Dependencies: r-matrix@1.7-5
Channel: guix-arg
Location: guix-arg/packages/r-arg.scm (guix-arg packages r-arg)
Home page: https://github.com/blueraleigh/gaia
Licenses: Expat
Build system: r
Synopsis:
Description:
relate 1.2.2-7bd53c7
Dependencies: zlib@1.3.1
Channel: guix-arg
Location: guix-arg/packages/relate.scm (guix-arg packages relate)
Home page: https://myersgroup.github.io/relate/
Licenses:
Build system: cmake
Synopsis: Relate
Description:

Relate

singer 0.1.9
Propagated dependencies: python@3.12.12 python-tskit@1.0.3 python-numpy@2.3.1
Channel: guix-arg
Location: guix-arg/packages/singer.scm (guix-arg packages singer)
Home page: https://github.com/popgenmethods/SINGER
Licenses: Expat
Build system: gnu
Synopsis: Sampling and inference of genealogies with recombination
Description:

Bayesian method to do posterior sampling of Ancestral Recombination Graph under Sequentially Markovian Coalescent.

slim-sim-5 5.2
Channel: guix-arg
Location: guix-arg/packages/slim.scm (guix-arg packages slim)
Home page: https://messerlab.org/slim/
Licenses: GPL 3+
Build system: cmake
Synopsis: Forward simulation software package for population genetics and evolutionary biology.
Description:

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.

slim-sim-5 5.2
Channel: guix-arg
Location: guix-arg/packages/slim.scm (guix-arg packages slim)
Home page: https://messerlab.org/slim/
Licenses: GPL 3+
Build system: cmake
Synopsis: Forward simulation software package for population genetics and evolutionary biology.
Description:

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.

slim-sim-4 4.3
Channel: guix-arg
Location: guix-arg/packages/slim.scm (guix-arg packages slim)
Home page: https://messerlab.org/slim/
Licenses: GPL 3+
Build system: cmake
Synopsis: Forward simulation software package for population genetics and evolutionary biology.
Description:

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.

shapeit5 5.1.1
Dependencies: boost@1.89.0 curl@8.6.0 htslib@1.21 libdeflate@1.19 openssl@3.5.5 zlib@1.3.1
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://odelaneau.github.io/
Licenses: Expat
Build system: gnu
Synopsis: Segmented HAPlotype Estimation and Imputation Tool
Description:

SHAPEIT5 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data.

whatshap 2.8
Propagated dependencies: python-biopython@1.86 python-networkx@3.4.2 python-pulp@2.4 python-pyfaidx@0.9.0.3 python-pysam@0.23.3 python-scipy@1.16.3 python-xopen@1.8.0
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/whatshap/whatshap
Licenses: Expat
Build system: pyproject
Synopsis: Phase genomic variants using DNA sequencing reads
Description:

phase genomic variants using DNA sequencing reads.

python-edlib 1.3.9.post1
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/Martinsos/edlib
Licenses: Expat
Build system: pyproject
Synopsis: Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.
Description:

Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.

sapphire 1.0.0-97768d8
Dependencies: htslib@1.21 zstd@1.5.6
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/rwk-unil/sapphire
Licenses: Expat
Build system: gnu
Synopsis: Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)
Description:

Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)

smudgeplot 0.5.4
Propagated dependencies: python-matplotlib@3.10.8 python-numpy@2.3.1 python-pandas@2.3.3
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/KamilSJaron/smudgeplot
Licenses: ASL 2.0
Build system: pyproject
Synopsis: smudgeplot
Description:

Inference of ploidy and heterozygosity structure using whole genome sequencing data.

sniffles 2.8.0
Propagated dependencies: python-edlib@1.3.9.post1 python-numpy@2.3.1 python-psutil@7.2.2 python-pysam@0.23.3 python-pyspoa@0.3.2
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/fritzsedlazeck/Sniffles
Licenses: Expat
Build system: pyproject
Synopsis: A fast structural variation caller for long-read sequencing data
Description:

This package provides a fast structural variation caller for long-read sequencing data.

minibwa 0.4
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/lh3/minibwa
Licenses: Expat
Build system: gnu
Synopsis: Successor of bwa-mem for short-read alignment
Description:

Minibwa aligns short reads against a reference genome. It is the successor of bwa-mem with a different algorithm. Minibwa is over three times as fast as the original bwa-mem and twice as fast as bwa-mem2 at comparable accuracy. While minibwa works with accurate long reads, minimap2 is more robust under high error rate.

python-fastdfe 1.3.3
Propagated dependencies: python-biopython@1.86 python-cyvcf2@0.31.2 python-jsonpickle@4.0.0 python-matplotlib@3.10.8 python-mpmath@1.3.0 python-multiprocess@0.70.18 python-numpy@2.3.1 python-pandas@2.3.3 python-pyyaml@6.0.2 python-requests@2.32.5 python-scipy@1.16.3 python-seaborn@0.13.2 python-tqdm@4.67.1 python-typing-extensions@4.15.0
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://fastdfe.readthedocs.io/en/latest/index.html
Licenses: GPL 3
Build system: pyproject
Synopsis: Fast and flexible inference of the distribution of fitness effects (DFE).
Description:

Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.

python-pyspoa 0.3.2
Dependencies: bioparser@3.1.0 biosoup@0.11.0
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/nanoporetech/pyspoa
Licenses:
Build system: pyproject
Synopsis: Python bindings to spoa
Description:

Python bindings to spoa.

fastk 1.2
Dependencies: bzip2@1.0.8 curl@8.6.0 openssl@3.5.5 xz@5.4.5
Propagated dependencies: zlib@1.3.1
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/thegenemyers/FASTK
Licenses: copyleft-next
Build system: gnu
Synopsis: FastK
Description:

A fast K-mer counter for high-fidelity shotgun datasets.

genomescope2 2.1.0
Propagated dependencies: r@4.6.0 python-wrapper@3.12.12 r-argparse@2.3.1 r-minpack-lm@1.2-4
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/tbenavi1/genomescope2.0
Licenses: ASL 2.0
Build system: r
Synopsis: genomescope2
Description:

Reference-free profiling of polyploid genomes.

fastp 1.3.6
Dependencies: isa-l@2.31.1 libdeflate@1.19 google-highway@1.3.0
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://github.com/OpenGene/fastp/
Licenses: Expat
Build system: gnu
Synopsis: All-in-one FastQ preprocessor
Description:

Fastp is a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool has multi-threading support to afford high performance.

ancestry_hmm 1.0.2
Channel: alx-bioinfo
Location: alx-bioinfo/packages/inference.scm (alx-bioinfo packages inference)
Home page: https://github.com/russcd/Ancestry_HMM
Licenses: GPL 3
Build system: gnu
Synopsis: Inference of local ancestry and admixture time
Description:

A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy.

abaddon 0.2.2
Dependencies: gtkmm@3.24.9 gtk+@3.24.51 glibmm@2.86.0 curl@8.6.0 sqlite@3.39.3 openssl@3.5.5 nlohmann-json@3.12.0 libhandy@1.8.3 opus@1.6.1 libsodium@1.0.22 libsecret@0.21.7 rnnoise@0-0.7f449bf miniaudio@0.11.22 spdlog@1.15.3 pulseaudio@16.1
Channel: cast
Location: cast/packages/abaddon.scm (cast packages abaddon)
Home page: https://github.com/uowuo/abaddon
Licenses: GPL 3
Build system: cmake
Synopsis: Alternative Discord client with voice support made with C++ and GTK 3
Description:

Abaddon is a Discord client that does not run on Electron.

keychain 1.3.1
Dependencies: libsecret@0.21.7
Channel: cast
Location: cast/packages/abaddon.scm (cast packages abaddon)
Home page: https://github.com/hrantzsch/keychain
Licenses: Expat
Build system: cmake
Synopsis: Cross-platform wrapper for the OS credential storage
Description:

Keychain is a thin cross-platform wrapper to access the operating system's credential storage in C++. Keychain supports getting, adding/replacing, and deleting passwords on macOS, Linux, and Windows.

ixwebsocket 11.4.6
Dependencies: openssl@3.5.5 zlib@1.3.1
Channel: cast
Location: cast/packages/abaddon.scm (cast packages abaddon)
Home page: https://github.com/machinezone/IXWebSocket
Licenses: Modified BSD
Build system: cmake
Synopsis: Websocket and http client and server library for C++
Description:

IXWebSocket is a C++ library for WebSocket client and server development. It has minimal dependencies (no boost), is very simple to use and support everything you'll likely need for websocket dev (SSL, deflate compression, compiles on most platforms, etc...).

badwolf 1.4.0
Dependencies: gtk+@3.24.51 webkitgtk-for-gtk3@2.50.3 libxml2@2.14.6 gstreamer@1.28.1 gst-plugins-base@1.28.1 gst-plugins-good@1.28.1 gst-plugins-bad@1.28.1 gst-libav@1.28.1
Channel: cast
Location: cast/packages/browsers.scm (cast packages browsers)
Home page: https://hacktivis.me/projects/badwolf
Licenses: Modified BSD
Build system: gnu
Synopsis: Minimalist and privacy-oriented WebKitGTK+ browser
Description:

BadWolf is a minimalist and privacy-oriented WebKitGTK+ browser

falkon-latest 25.12.0
Dependencies: karchive@6.23.0 kcoreaddons@6.23.0 kcrash@6.23.0 ki18n@6.23.0 kio@6.23.0 kwallet@6.23.0 openssl@3.5.5 purpose@6.23.0 qt5compat@6.9.2 qtsvg@6.9.2 qtwebengine@6.9.3 qtwayland@6.9.2 xcb-util@0.4.1
Channel: cast
Location: cast/packages/browsers.scm (cast packages browsers)
Home page: https://www.falkon.org/
Licenses: GPL 3+
Build system: qt
Synopsis: Qt-based web browser for KDE
Description:

Falkon is is a Qt-based web browser for KDE.

Total packages: 72465