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Relate
Bayesian method to do posterior sampling of Ancestral Recombination Graph under Sequentially Markovian Coalescent.
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.
SHAPEIT5 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data.
phase genomic variants using DNA sequencing reads.
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.
Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)
Inference of ploidy and heterozygosity structure using whole genome sequencing data.
This package provides a fast structural variation caller for long-read sequencing data.
Minibwa aligns short reads against a reference genome. It is the successor of bwa-mem with a different algorithm. Minibwa is over three times as fast as the original bwa-mem and twice as fast as bwa-mem2 at comparable accuracy. While minibwa works with accurate long reads, minimap2 is more robust under high error rate.
Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.
Python bindings to spoa.
A fast K-mer counter for high-fidelity shotgun datasets.
Reference-free profiling of polyploid genomes.
Fastp is a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool has multi-threading support to afford high performance.
A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy.
Abaddon is a Discord client that does not run on Electron.
Keychain is a thin cross-platform wrapper to access the operating system's credential storage in C++. Keychain supports getting, adding/replacing, and deleting passwords on macOS, Linux, and Windows.
IXWebSocket is a C++ library for WebSocket client and server development. It has minimal dependencies (no boost), is very simple to use and support everything you'll likely need for websocket dev (SSL, deflate compression, compiles on most platforms, etc...).
BadWolf is a minimalist and privacy-oriented WebKitGTK+ browser
Falkon is is a Qt-based web browser for KDE.