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This package provides a collection of functions to help in the analysis of right-censored survival data. These extend the methods available in the survival package.
This package is a r-ggplot2 extension that provides flipped components:
horizontal versions of
r-ggplot2stats andr-ggplot2geoms;vertical versions of
r-ggplot2positions.
This package provides functions for making low-level API requests to Amazon Web Services. The functions handle building, signing, and sending requests, and receiving responses. They are designed to help build higher-level interfaces to individual services, such as Simple Storage Service (S3).
This package provides a set of Shiny apps for effective communication and understanding in statistics. The current version includes properties of normal distribution, properties of sampling distribution, one-sample z and t tests, two samples independent (unpaired) t test and analysis of variance.
This package provides implementations of the SHA-3 cryptographic hash and SHAKE256 extendable-output functions (XOF).
This package provides infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. It also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).
This package provides access to phyloinformatic data in NeXML format. The package should add new functionality to R such as the possibility to manipulate NeXML objects in more various and refined way and compatibility with ape objects.
This package provides a unified parallelization framework for multiple backends. This package is designed for internal package and interactive usage. The main operation is parallel mapping over lists. It supports local, multicore, mpi and BatchJobs mode. It allows tagging of the parallel operation with a level name that can be later selected by the user to switch on parallel execution for exactly this operation.
r-kmer is an R package for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.
In order to smoothly animate the transformation of polygons and paths, many aspects needs to be taken into account, such as differing number of control points, changing center of rotation, etc. The transformr package provides an extensive framework for manipulating the shapes of polygons and paths and can be seen as the spatial brother to the tweenr package.
This package provides tools to create interactive tutorials using R Markdown. Use a combination of narrative, figures, videos, exercises, and quizzes to create self-paced tutorials for learning about R and R packages.
This package provides an extendable, performant and multithreaded alt-string implementation backed by C++ vectors and strings.
This is a package for fast and user-friendly estimation of econometric models with multiple fixed-effects. It includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial. The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018). It further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
This package provides a wrapper for the download.file function, making it possible to download files over HTTPS across platforms. The RCurl package provides this functionality (and much more) but has external dependencies. This package has is implemented purely in R.
Geometry shapes in R are typically represented by matrices (points, lines), with more complex shapes being lists of matrices (polygons). Geometries will convert various R objects into these shapes. Conversion functions are available at both the R level, and through Rcpp.
This package provides beanplots, an alternative to boxplot/stripchart/violin plots. It can be used to plot univariate comparison graphs.
This package provides high level functions for parallel programming with Rcpp. For example, the parallelFor() function can be used to convert the work of a standard serial for loop into a parallel one and the parallelReduce() function can be used for accumulating aggregates or other values.
This package is a feature selection package of the mlr3 ecosystem. It selects the optimal feature set for any mlr3 learner. The package works with several optimization algorithms e.g. random search, Recursive feature elimination, and genetic search. Moreover, it can automatically optimize learners and estimate the performance of optimized feature sets with nested resampling.
This package implements tools designed to collect and organize Twitter data via Twitter's REST and stream Application Program Interfaces (API).
This package offers an implementation of the Abnormal blood profile score (ABPS). The ABPS is a part of the Athlete biological passport program of the World anti-doping agency, which combines several blood parameters into a single score in order to detect blood doping. The package also contains functions to calculate other scores used in anti-doping programs, such as the ratio of hemoglobin to reticulocytes (OFF-score), as well as example data.
This package provides building blocks for the design and analysis of multiobjective optimization algorithms.
This package provides an implementation of the Harmony algorithm for single cell integration. This package includes a standalone Harmony function and interfaces to external frameworks.
This is a package for estimation of one-dimensional probability distributions including kernel density estimation, weighted empirical cumulative distribution functions, Kaplan-Meier and reduced-sample estimators for right-censored data, heat kernels, kernel properties, quantiles and integration.
This package provides an up-to-date copy of the Internet Assigned Numbers Authority (IANA) Time Zone Database. It is updated periodically to reflect changes made by political bodies to time zone boundaries, UTC offsets, and daylight saving time rules. Additionally, this package provides a C++ interface for working with the date library. date provides comprehensive support for working with dates and date-times, which this package exposes to make it easier for other R packages to utilize. Headers are provided for calendar specific calculations, along with a limited interface for time zone manipulations.