The Author's personal R Package that contains miscellaneous functions. The current version of package contains miscellaneous functions for brain data to compute Asymmetry Index (AI) and bilateral (L+R) measures and reshape the data.

This package provides a fast JSON parser, generator and validator which converts JSON', NDJSON (Newline Delimited JSON') and GeoJSON (Geographic JSON') data to/from R objects. The standard R data types are supported (e.g. logical, numeric, integer) with configurable handling of NULL and NA values. Data frames, atomic vectors and lists are all supported as data containers translated to/from JSON'. GeoJSON data is read in as simple features objects. This implementation wraps the yyjson C library which is available from <https://github.com/ibireme/yyjson>.

This package performs nearest neighbor-based imputation using one or more alternative approaches to processing multivariate data. These include methods based on canonical correlation: analysis, canonical correspondence analysis, and a multivariate adaptation of the random forest classification and regression techniques of Leo Breiman and Adele Cutler. Additional methods are also offered. The package includes functions for comparing the results from running alternative techniques, detecting imputation targets that are notably distant from reference observations, detecting and correcting for bias, bootstrapping and building ensemble imputations, and mapping results.

Analyzing performances of cricketers and cricket teams based on yaml match data from Cricsheet <https://cricsheet.org/>.

Modelling the yield curve with some parametric models. The models implemented are: Nelson, C.R., and A.F. Siegel (1987) <doi: 10.1086/296409>, Diebold, F.X. and Li, C. (2006) <doi: 10.1016/j.jeconom.2005.03.005> and Svensson, L.E. (1994) <doi: 10.3386/w4871>. The package also includes the data of the term structure of interest rate of Federal Reserve Bank and European Central Bank.

Semiparametric modeling of lifetime data with crossing survival curves via Yang and Prentice model with piecewise exponential baseline distribution. Details about the model can be found in Demarqui and Mayrink (2019) <arXiv:1910.02406>. Model fitting carried out via likelihood-based and Bayesian approaches. The package also provides point and interval estimation for the crossing survival times.

An extension for NetSurfP-2.0 (Klausen et al. (2019) <doi:10.1002/prot.25674>) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with MaxQuant (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.

This package provides with parametric risk neutral densities and cumulative densities for futures prices on fixed-income products. It relies on options on Short Term Interest Rate futures contracts prices or options on bond futures contracts prices. It models the price of the underlying asset as a mixture of either two or three lognormal densities. It also brings new functions which provide with risk neutral densities and cumulative densities of the rate or the yield underlying the futures contract, using the density of the futures price. The package is based on the works of Melick, W. R. and Thomas, C. P. (1997) <doi:10.2307/2331318> and B. Bahra (1998) <doi:10.2139/ssrn.77429>.

Determines the sum of squares of the (2^n)-1 factorial effects in a 2^n factorial experiment using Yates algorithm.

Setting layout through YAML headers in R-Markdown documents, enabling their automatic generation. Functions and methods may summarize R objects in automatic reports, for instance check-lists and further reports applied to the packages taxlist and vegtable'.

Procedures to perform consensus clustering starting from a dissimilarity matrix or a data matrix. It's allowed to select if the subsampling has to be by samples or features. In case of computational heavy load, the procedures can run in parallel.

Facilitates download of financial data from Yahoo Finance <https://finance.yahoo.com/>, a vast repository of stock price data across multiple financial exchanges. The package offers a local caching system and support for parallel computation.

Obtain historical and near real time data related to stocks, index and currencies from the Yahoo Finance API. This package is community maintained and is not officially supported by Yahoo'. The accuracy of data is only as correct as provided on <https://finance.yahoo.com/>.

This package provides covariate-adjusted comparison of two groups of right censored data, where the binary group variable has separate short-term and long-term effects on the hazard function, while effects of covariates such as age, blood pressure, etc. are proportional on the hazard. The model was studied in Yang and Prentice (2015) <doi:10.1002/sim.6453> and it extends the two sample version of the short-term and long-term hazard ratio model proposed in Yang and Prentice (2005) <doi:10.1093/biomet/92.1.1>. The model extends the usual Cox proportional hazards model to allow more flexible hazard ratio patterns, such as gradual onset of effect, diminishing effect, and crossing hazard or survival functions. This package provides the following: 1) point estimates and confidence intervals for model parameters; 2) point estimate and confidence interval of the average hazard ratio; and 3) plots of estimated hazard ratio function with point-wise and simultaneous confidence bands.

Convert YMD format number or string to Date efficiently, using Rust's standard library. It also provides helper functions to handle Date, e.g., quick finding the beginning or end of the given period, adding months to Date, etc.

For any spending function specified by the user, this package provides corresponding boundaries for interim testing using the adaptively weighted log-rank test developed by Yang and Prentice (2010 <doi:10.1111/j.1541-0420.2009.01243.x>). The package uses a re-sampling method to obtain stopping boundaries at the interim looks.The output consists of stopping boundaries and observed values of the test statistics at the interim looks, along with nominal p-values defined as the probability of the test exceeding the specific observed test statistic value or critical value, regardless of the test behavior at other looks. The asymptotic validity of the stopping boundaries is established in Yang (2018 <doi:10.1002/sim.7958>).

This package provides a fast, correct, safe, and ergonomic YAML 1.2 parser and generator written in Rust'. Convert between YAML and simple R objects with full support for multi-document streams, tags, anchors, and aliases. Offers opt-in handlers for custom tag behavior and round-trips common R data structures. Implements the YAML 1.2.2 specification from the YAML Language Development Team (2021) <https://yaml.org/spec/1.2.2/>. Proudly supported by Posit.

Another implementation of general regression neural network in R based on Specht (1991) <DOI:10.1109/72.97934>. It is applicable to the functional approximation or the classification.

Dataset from the young elite swimmers study.

Semiparametric modeling of lifetime data with crossing survival curves via Yang and Prentice model with baseline hazard/odds modeled with Bernstein polynomials. Details about the model can be found in Demarqui et al. (2019) <arXiv:1910.04475>. Model fitting can be carried out via both maximum likelihood and Bayesian approaches. The package also provides point and interval estimation for the crossing survival times.

This package provides a YAML-based mechanism for working with table metadata. Supports compact syntax for creating, modifying, viewing, exporting, importing, displaying, and plotting metadata coded as column attributes. The yamlet dialect is valid YAML with defaults and conventions chosen to improve readability. See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.

Nonparametric estimation of discount functions and yield curves from transaction data of coupon paying bonds. Koo, B., La Vecchia, D., & Linton, O. B. (2021) <doi:10.1016/j.jeconom.2020.04.014> describe an application of this package using the Center for Research in Security Prices (CRSP) Bond Data and document its implementation.

This package provides a collection of lightweight helper functions (imps) both for interactive use and for inclusion within other packages. These include functions for minimal input assertions, visualising colour palettes, quoting user input, searching rows of a data frame and capturing string tokens.

An alternative canonical correlation/redundancy analysis function, with associated print, plot, and summary methods. A method for generating helio plots is also included.