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Extends the SelectBoost approach to Generalized Additive Models for Location, Scale and Shape (GAMLSS). Implements bootstrap stability-selection across parameter-specific formulas (mu, sigma, nu, tau) via gamlss::stepGAIC(). Includes optional standardization of predictors and helper functions for corrected AIC calculation. More details can be found in Bertrand and Maumy (2024) <https://hal.science/hal-05352041> that highlights correlation-aware resampling to improve variable selection for GAMLSS and quantile regression when predictors are numerous and highly correlated.
This package provides a graphical user interface (GUI) for fitting Bayesian regression models using the package brms which in turn relies on Stan (<https://mc-stan.org/>). The shinybrms GUI is a shiny app.
This package provides computational building blocks for fixed-radius spatial aggregation, weighted circle-placement problems, hotspot detection, and polygon-based spatial summaries. The package focuses on efficient determination of the sum of observations within a given radius, identifying areas of high local concentration, and aggregating point data to polygon geometries. These methods are useful for applications such as insurance, urban analytics, environmental exposure analysis, and other spatial point pattern workflows. The fixed-radius circle placement problem is discussed by Chazelle and Lee (1986) <doi:10.1007/BF02238188>, and related maximum covering problems are described by Church (1974) <doi:10.1007/BF01942293>.
Testing of soil for the contents of organic carbon, and available macro- and micro-nutrients is a crucial part of soil fertility assessment. This package computes some routinely tested soil properties viz. organic carbon (C), total nitrogen (N), available N, mineral N, available phosphorus (P), available potassium (K), available iron (Fe), available zinc (Zn), available manganese (Mn), available copper (Cu), and available nickel (Ni) in soil based on laboratory analysis data obtained by most commonly followed protocols. Besides, it can also draw standard curves based on absorption/emission vs. concentration data, and give out unknown concentrations from absorption/emission readings.
This package provides a generalization of the statistic used in Friedman's ANOVA method and in Durbin's rank test. This nonparametric statistical test is useful for the data obtained from block designs with missing observations occurring randomly. A resulting p-value is based on the chi-squared distribution and Monte Carlo method.
Estimates previously compiled state-space modeling for mouse-tracking experiments using the rstan package, which provides the R interface to the Stan C++ library for Bayesian estimation.
This package provides basic functions that support an implementation of multi-profile case (Case 3) best-worst scaling (BWS). Case 3 BWS is a question-based survey method to elicit people's preferences for attribute levels. Case 3 BWS constructs various combinations of attribute levels (profiles) and then asks respondents to select the best and worst profiles in each choice set. A main function creates a dataset for the analysis from the choice sets and the responses to the questions. For details on Case 3 BWS, refer to Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
Assessment of the distributions of baseline continuous and categorical variables in randomised trials. This method is based on the Carlisle-Stouffer method with Monte Carlo simulations. It calculates p-values for each trial baseline variable, as well as combined p-values for each trial - these p-values measure how compatible are distributions of trials baseline variables with random sampling. This package also allows for graphically plotting the cumulative frequencies of computed p-values. Please note that code was partly adapted from Carlisle JB, Loadsman JA. (2017) <doi:10.1111/anae.13650>.
We have designed this package to address experimental scenarios involving multiple covariates. It focuses on construction of Optimal Covariate Designs (OCDs), checking space filling property of the developed design. The primary objective of the package is to generate OCDs using four methods viz., M array method, Juxtapose method, Orthogonal Integer Array and Hadamard method. The package also evaluates space filling properties of both the base design and OCDs using the MaxPro criterion, providing a meaningful basis for comparison. In addition, it includes tool to visualize the spread offered by the design points in the form of scatterplot, which help users to assess distribution and coverage of design points.
Sejong(http://www.sejong.or.kr/) corpus and Hannanum(http://semanticweb.kaist.ac.kr/home/index.php/HanNanum) dictionaries for KoNLP.
This package provides functions to run and assist four different similarity measures. The similarity measures included are: longest common subsequence (LCSS), Frechet distance, edit distance and dynamic time warping (DTW). Each of these similarity measures can be calculated from two n-dimensional trajectories, both in matrix form.
Exporting shiny applications with shinylive allows you to run them entirely in a web browser, without the need for a separate R server. The traditional way of deploying shiny applications involves in a separate server and client: the server runs R and shiny', and clients connect via the web browser. When an application is deployed with shinylive', R and shiny run in the web browser (via webR'): the browser is effectively both the client and server for the application. This allows for your shiny application exported by shinylive to be hosted by a static web server.
The cartogram heatmaps generated by the included methods are an alternative to choropleth maps for the United States and are based on work by the Washington Post graphics department in their report on "The states most threatened by trade" (<http://www.washingtonpost.com/wp-srv/special/business/states-most-threatened-by-trade/>). "State bins" preserve as much of the geographic placement of the states as possible but have the look and feel of a traditional heatmap. Functions are provided that allow for use of a binned, discrete scale, a continuous scale or manually specified colors depending on what is needed for the underlying data.
Fits linear regression models on datasets residing in SQL databases without pulling data into R memory. Computes sufficient statistics inside the database engine via a single aggregation query and solves the normal equations in R.
This package provides datasets from Vigen (2015) rescued from the Internet Wayback Machine. These should be preserved for statistics introductory courses as these make it very clear that correlation is not causation.
Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering. The R code is based primarily on the article "Image Segmentation using SLIC Superpixels and Affinity Propagation Clustering, Bao Zhou, International Journal of Science and Research (IJSR), 2013" <https://www.ijsr.net/archive/v4i4/SUB152869.pdf>.
This package provides functions to perform stepwise split regularized regression. The approach first uses a stepwise algorithm to split the variables into the models with a goodness of fit criterion, and then regularization is applied to each model. The weights of the models in the ensemble are determined based on a criterion selected by the user.
This gadget allows you to use the recipes package belonging to tidymodels to carry out the data preprocessing tasks in an interactive way. Build your recipe by dragging the variables, visually analyze your data to decide which steps to use, add those steps and preprocess your data.
An implementation of a phylogenetic comparative method. It can fit univariate among-species Ornstein-Uhlenbeck models of phenotypic trait evolution, where the trait evolves towards a primary optimum. The optimum can be modelled as a single parameter, as multiple discrete regimes on the phylogenetic tree, and/or with continuous covariates. See also Hansen (1997) <doi:10.2307/2411186>, Butler & King (2004) <doi:10.1086/426002>, Hansen et al. (2008) <doi:10.1111/j.1558-5646.2008.00412.x>.
An index is created using a mathematical model that transforms multi-dimensional variables into a single value. These variables are often correlated, and while PCA-based indices can address the issue of multicollinearity, they typically do not account for survey weights, which can lead to inaccurate rankings of survey units such as households, districts, or states. To resolve this, the current package facilitates the development of a principal component analysis-based composite index by incorporating survey weights for each sample observation. This ensures the generation of a survey-weighted principal component-based normalized composite index. Additionally, the package provides a normalized principal component-based composite index and ranks the sample observations based on the values of the composite indices. For method details see, Skinner, C. J., Holmes, D. J. and Smith, T. M. F. (1986) <DOI:10.1080/01621459.1986.10478336>, Singh, D., Basak, P., Kumar, R. and Ahmad, T. (2023) <DOI:10.3389/fams.2023.1274530>.
This package provides a general framework for performing sparse functional clustering as originally described in Floriello and Vitelli (2017) <doi:10.1016/j.jmva.2016.10.008>, with the possibility of jointly handling data misalignment (see Vitelli, 2019, <doi:10.48550/arXiv.1912.00687>).
This package produces LaTeX code, HTML/CSS code and ASCII text for well-formatted tables that hold regression analysis results from several models side-by-side, as well as summary statistics.
Computes the required sample size for estimation of totals, means and proportions under complex sampling designs.
This package provides functions and classes for spatial resampling to use with the rsample package, such as spatial cross-validation (Brenning, 2012) <doi:10.1109/IGARSS.2012.6352393>. The scope of rsample and spatialsample is to provide the basic building blocks for creating and analyzing resamples of a spatial data set, but neither package includes functions for modeling or computing statistics. The resampled spatial data sets created by spatialsample do not contain much overhead in memory.