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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-longit 0.1.0
Propagated dependencies: r-rjags@4-17 r-r2jags@0.8-9 r-missforest@1.6.1 r-aiccmodavg@2.3-4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=longit
Licenses: GPL 3
Build system: r
Synopsis: High Dimensional Longitudinal Data Analysis Using MCMC
Description:

High dimensional longitudinal data analysis with Markov Chain Monte Carlo(MCMC). Currently support mixed effect regression with or without missing observations by considering covariance structures. It provides estimates by missing at random and missing not at random assumptions. In this R package, we present Bayesian approaches that statisticians and clinical researchers can easily use. The functions methodology is based on the book "Bayesian Approaches in Oncology Using R and OpenBUGS" by Bhattacharjee A (2020) <doi:10.1201/9780429329449-14>.

r-lineup 0.44
Propagated dependencies: r-qtl@1.72 r-class@7.3-23
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/kbroman/lineup
Licenses: GPL 3
Build system: r
Synopsis: Lining Up Two Sets of Measurements
Description:

This package provides tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues. Broman et al. (2015) <doi:10.1534/g3.115.019778>.

r-liftr 0.9.2
Dependencies: docker@20.10.27
Propagated dependencies: r-yaml@2.3.10 r-stringr@1.6.0 r-rstudioapi@0.17.1 r-rmarkdown@2.30 r-knitr@1.50
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://nanx.me/liftr/
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Containerize R Markdown Documents for Continuous Reproducibility
Description:

Persistent reproducible reporting by containerization of R Markdown documents.

r-lofifonts 0.1.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/coolbutuseless/lofifonts
Licenses: Expat
Build system: r
Synopsis: Text Rendering with Bitmap and Vector Fonts
Description:

Alternate font rendering is useful when rendering text to novel graphics outputs where modern font rendering is not available or where bespoke text positioning is required. Bitmap and vector fonts allow for custom layout and rendering using pixel coordinates and line drawing. Formatted text is created as a data.frame of pixel coordinates (for bitmap fonts) or stroke coordinates (for vector fonts). All text can be easily previewed as a matrix or raster image. A selection of fonts is included with this package.

r-login 0.9.3
Propagated dependencies: r-stringr@1.6.0 r-shinyjs@2.1.0 r-shinybusy@0.3.3 r-shiny@1.11.1 r-htmltools@0.5.8.1 r-emayili@0.9.3 r-digest@0.6.39 r-dbi@1.2.3 r-cookies@0.2.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/jbryer/login
Licenses: GPL 3+
Build system: r
Synopsis: 'shiny' Login Module
Description:

Framework for adding authentication to shiny applications. Provides flexibility as compared to other options for where user credentials are saved, allows users to create their own accounts, and password reset functionality. Bryer (2024) <doi:10.5281/zenodo.10987876>.

r-librarian 1.8.1
Propagated dependencies: r-remotes@2.5.0 r-biocmanager@1.30.27
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/DesiQuintans/librarian
Licenses: GPL 3
Build system: r
Synopsis: Install, Update, Load Packages from CRAN, 'GitHub', and 'Bioconductor' in One Step
Description:

Automatically install, update, and load CRAN', GitHub', and Bioconductor packages in a single function call. By accepting bare unquoted names for packages, it's easy to add or remove packages from the list.

r-lmf 1.2.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lmf
Licenses: GPL 2
Build system: r
Synopsis: Functions for Estimation and Inference of Selection in Age-Structured Populations
Description:

This package provides methods for estimation and statistical inference on directional and fluctuating selection in age-structured populations.

r-lmeresampler 0.2.4
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-statmod@1.5.1 r-purrr@1.2.0 r-nlmeu@0.71.7 r-matrix@1.7-4 r-magrittr@2.0.4 r-hlmdiag@0.5.1 r-ggplot2@4.0.1 r-ggdist@3.3.3 r-forcats@1.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/aloy/lmeresampler
Licenses: GPL 3
Build system: r
Synopsis: Bootstrap Methods for Nested Linear Mixed-Effects Models
Description:

Bootstrap routines for nested linear mixed effects models fit using either lme4 or nlme'. The provided bootstrap() function implements the parametric, residual, cases, random effect block (REB), and wild bootstrap procedures. An overview of these procedures can be found in Van der Leeden et al. (2008) <doi: 10.1007/978-0-387-73186-5_11>, Carpenter, Goldstein & Rasbash (2003) <doi: 10.1111/1467-9876.00415>, and Chambers & Chandra (2013) <doi: 10.1080/10618600.2012.681216>.

r-lipinskifilters 1.0.1
Propagated dependencies: r-rcdk@3.8.2 r-knitr@1.50 r-itertools@0.1-3 r-ggplot2@4.0.1 r-cowplot@1.2.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LipinskiFilters
Licenses: Expat
Build system: r
Synopsis: Computes and Visualize Lipinski's Parameters
Description:

This computes Lipinski Rule of Five parameters and offers visualization for drug discovery. It analyzes molecular properties like molecular weight, hydrogen bond donors, acceptors, and ALogP, providing histograms and pass/fail status plots for efficient compound evaluation, aiding in drug development.

r-ltsa 1.4.6.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: http://www.stats.uwo.ca/faculty/aim
Licenses: GPL 2+
Build system: r
Synopsis: Linear Time Series Analysis
Description:

This package provides methods of developing linear time series modelling. Methods are given for loglikelihood computation, forecasting and simulation.

r-lcfdata 2.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LCFdata
Licenses: GPL 2
Build system: r
Synopsis: Data sets for package ``LMERConvenienceFunctions''
Description:

This package contains (1) event-related brain potential data recorded from 10 participants at electrodes Fz, Cz, Pz, and Oz (0--300 ms) in the context of Antoine Tremblay's PhD thesis (Tremblay, 2009); (2) ERP amplitudes at electrode Fz restricted to the 100 to 175 millisecond time window; and (3) plotting data generated from a linear mixed-effects model.

r-lambdr 1.2.5
Propagated dependencies: r-logger@0.4.1 r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://lambdr.mdneuzerling.com/
Licenses: Expat
Build system: r
Synopsis: Create a Runtime for Serving Containerised R Functions on 'AWS Lambda'
Description:

Runtime for serving containers that can execute R code on the AWS Lambda serverless compute service <https://aws.amazon.com/lambda/>. Provides the necessary functionality for handling the various endpoints required for accepting new input and sending responses.

r-logicforest 2.1.2
Propagated dependencies: r-survival@3.8-3 r-logicreg@1.6.6
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LogicForest
Licenses: GPL 3
Build system: r
Synopsis: Logic Forest
Description:

Logic Forest is an ensemble machine learning method that identifies important and interpretable combinations of binary predictors using logic regression trees to model complex relationships with an outcome. Wolf, B.J., Slate, E.H., Hill, E.G. (2010) <doi:10.1093/bioinformatics/btq354>.

r-landscapemetrics 2.2.1
Propagated dependencies: r-tibble@3.3.0 r-terra@1.8-86 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-ggplot2@4.0.1 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://r-spatialecology.github.io/landscapemetrics/
Licenses: GPL 3
Build system: r
Synopsis: Landscape Metrics for Categorical Map Patterns
Description:

Calculates landscape metrics for categorical landscape patterns in a tidy workflow. landscapemetrics reimplements the most common metrics from FRAGSTATS (<https://www.fragstats.org/>) and new ones from the current literature on landscape metrics. This package supports terra SpatRaster objects as input arguments. It further provides utility functions to visualize patches, select metrics and building blocks to develop new metrics.

r-lpint 2.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lpint
Licenses: GPL 2+
Build system: r
Synopsis: Local Polynomial Estimators of the Intensity Function and Its Derivatives
Description:

This package provides functions to estimate the intensity function and its derivative of a given order of a multiplicative counting process using the local polynomial method.

r-lpsmooth 0.1.3
Propagated dependencies: r-truncnorm@1.0-9 r-polynom@1.4-1 r-orthopolynom@1.0-6.1 r-nloptr@2.2.1 r-lpgraph@2.1 r-lpbkg@1.2 r-hmisc@5.2-4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LPsmooth
Licenses: GPL 3
Build system: r
Synopsis: LP Smoothed Inference and Graphics
Description:

Classical tests of goodness-of-fit aim to validate the conformity of a postulated model to the data under study. In their standard formulation, however, they do not allow exploring how the hypothesized model deviates from the truth nor do they provide any insight into how the rejected model could be improved to better fit the data. To overcome these shortcomings, we establish a comprehensive framework for goodness-of-fit which naturally integrates modeling, estimation, inference and graphics. In this package, the deviance tests and comparison density plots are performed to conduct the LP smoothed inference, where the letter L denotes nonparametric methods based on quantiles and P stands for polynomials. Simulations methods are used to perform variance estimation, inference and post-selection adjustments. Algeri S. and Zhang X. (2020) <arXiv:2005.13011>.

r-loon-shiny 1.0.4
Propagated dependencies: r-shiny@1.11.1 r-loon-ggplot@1.3.5 r-loon@1.4.3 r-gridextra@2.3 r-colourpicker@1.3.0 r-base64enc@0.1-3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=loon.shiny
Licenses: GPL 2
Build system: r
Synopsis: Automatically Create a 'Shiny' App Based on Interactive 'Loon' Widgets
Description:

Package shiny provides interactive web applications in R. Package loon is an interactive toolkit engaged in open-ended, creative and unscripted data exploration. The loon.shiny package can take loon widgets and display a selfsame shiny app.

r-lcpm 0.1.1
Propagated dependencies: r-plyr@1.8.9 r-numderiv@2016.8-1.1 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lcpm
Licenses: GPL 3
Build system: r
Synopsis: Ordinal Outcomes: Generalized Linear Models with the Log Link
Description:

An implementation of the Log Cumulative Probability Model (LCPM) and Proportional Probability Model (PPM) for which the Maximum Likelihood Estimates are determined using constrained optimization. This implementation accounts for the implicit constraints on the parameter space. Other features such as standard errors, z tests and p-values use standard methods adapted from the results based on constrained optimization.

r-lme4breeding 1.1.0
Propagated dependencies: r-matrix@1.7-4 r-lme4@1.1-37 r-enhancer@1.1.0 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lme4breeding
Licenses: GPL 2+
Build system: r
Synopsis: Breeding-Related Mixed-Effects Models
Description:

Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the lme4 machinery. The core computational algorithms are implemented using the Eigen C++ library for numerical linear algebra and RcppEigen glue'.

r-ls2w 1.3.7
Propagated dependencies: r-wavethresh@4.7.3 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LS2W
Licenses: GPL 2
Build system: r
Synopsis: Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme
Description:

Estimates two-dimensional local wavelet spectra.

r-lenght 0.1.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lenght
Licenses: Expat
Build system: r
Synopsis: Allow Misspellings of Length Function
Description:

Convenient aliases for common ways of misspelling the base R function length(). These include every permutation of the final three letters.

r-ldsep 2.1.6
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-modeest@2.4.0 r-matrixstats@1.5.0 r-lpsolve@5.6.23 r-foreach@1.5.2 r-doparallel@1.0.17 r-corrplot@0.95 r-ashr@2.2-63 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://dcgerard.github.io/ldsep/
Licenses: GPL 3+
Build system: r
Synopsis: Linkage Disequilibrium Shrinkage Estimation for Polyploids
Description:

Estimate haplotypic or composite pairwise linkage disequilibrium (LD) in polyploids, using either genotypes or genotype likelihoods. Support is provided to estimate the popular measures of LD: the LD coefficient D, the standardized LD coefficient D', and the Pearson correlation coefficient r. All estimates are returned with corresponding standard errors. These estimates and standard errors can then be used for shrinkage estimation. The main functions are ldfast(), ldest(), mldest(), sldest(), plot.lddf(), format_lddf(), and ldshrink(). Details of the methods are available in Gerard (2021a) <doi:10.1111/1755-0998.13349> and Gerard (2021b) <doi:10.1038/s41437-021-00462-5>.

r-longreadvqs 0.1.4
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-stringdist@0.9.15 r-seqinr@4.2-36 r-scales@1.4.0 r-reshape2@1.4.5 r-rcolorbrewer@1.1-3 r-pwalign@1.6.0 r-purrr@1.2.0 r-plyr@1.8.9 r-magrittr@2.0.4 r-iranges@2.44.0 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-cowplot@1.2.0 r-biostrings@2.78.0 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/NakarinP/longreadvqs
Licenses: GPL 3
Build system: r
Synopsis: Viral Quasispecies Comparison from Long-Read Sequencing Data
Description:

This package performs variety of viral quasispecies diversity analyses [see Pamornchainavakul et al. (2024) <doi:10.21203/rs.3.rs-4637890/v1>] based on long-read sequence alignment. Main functions include 1) sequencing error and other noise minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.

r-limnopalettes 0.1.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/SwampThingPaul/LimnoPalettes
Licenses: GPL 3
Build system: r
Synopsis: Limnology Themed Palette Generator
Description:

Palettes generated from limnology based field and laboratory photos. Palettes can be used to generate color values to be used in any functions that calls for a color (i.e. ggplot(), plot(), flextable(), etc.).

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Total results: 68658