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If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.
Statistics and graphics for streamflow history, water quality trends, and the statistical modeling algorithm: Weighted Regressions on Time, Discharge, and Season (WRTDS).
Download data from the European Social Survey directly from their website <http://www.europeansocialsurvey.org/>. There are two families of functions that allow you to download and interactively check all countries and rounds available.
This package provides functions of five estimation method for ED50 (50 percent effective dose) are provided, and they are respectively Dixon-Mood method (1948) <doi:10.2307/2280071>, Choi's original turning point method (1990) <doi:10.2307/2531453> and it's modified version given by us, as well as logistic regression and isotonic regression. Besides, the package also supports comparison between two estimation results.
Provide the EMU Speech Database Management System (EMU-SDMS) with database management, data extraction, data preparation and data visualization facilities. See <https://ips-lmu.github.io/The-EMU-SDMS-Manual/> for more details.
This package provides a built-in Nemaplex database for nematodes, which can be used to search for various nematodes. Also supports various nematode community and functional analyses such as nematode diversity, maturity index, metabolic footprint, and functional guild. The methods are based on <https://shiny.wur.nl/ninja/>, Bongers, T. (1990) <doi:10.1007/BF00324627>, Ferris, H. (2010) <doi:10.1016/j.ejsobi.2010.01.003>, Wan, B. et al. (2022) <doi:10.1016/j.soilbio.2022.108695>, and Van Den Hoogen, J. et al. (2019) <doi:10.1038/s41586-019-1418-6>.
This package provides methods for data analysis from an entropic perspective. These methods are nonparametric and perform well on non-ordinal data. Currently includes HeatMap() for visualizing distributional characteristics among multiple populations (groups).
Analytical methods to locate and characterise ecotones, ecosystems and environmental patchiness along ecological gradients. Methods are implemented for isolated sampling or for space/time series. It includes Detrended Correspondence Analysis (Hill & Gauch (1980) <doi:10.1007/BF00048870>), fuzzy clustering (De Cáceres et al. (2010) <doi:10.1080/01621459.1963.10500845>), biodiversity indices (Jost (2006) <doi:10.1111/j.2006.0030-1299.14714.x>), and network analyses (Epskamp et al. (2012) <doi:10.18637/jss.v048.i04>) - as well as tools to explore the number of clusters in the data. Functions to produce synthetic ecological datasets are also provided.
Unofficial API wrapper for Euroleague and Eurocup basketball API (<https://www.euroleaguebasketball.net/en/euroleague/>), it allows to retrieve real-time and historical standard and advanced statistics about competitions, teams, players and games.
Implementation of Energy Trees, a statistical model to perform classification and regression with structured and mixed-type data. The model has a similar structure to Conditional Trees, but brings in Energy Statistics to test independence between variables that are possibly structured and of different nature. Currently, the package covers functions and graphs as structured covariates. It builds upon partykit to provide functionalities for fitting, printing, plotting, and predicting with Energy Trees. Energy Trees are described in Giubilei et al. (2022) <arXiv:2207.04430>.
Access and interrogate EMODnet (European Marine Observation and Data Network) Web Feature Service data <https://emodnet.ec.europa.eu/en/emodnet-web-service-documentation#data-download-services>. This includes listing existing data sources, and getting data from each of them.
Tests the equality of two covariance matrices, used in paper "Two sample tests for high dimensional covariance matrices." Li and Chen (2012) <arXiv:1206.0917>.
Inspect survival data, plot Kaplan-Meier curves, assess the proportional hazards assumption, fit parametric survival models, predict and plot survival and hazards, and export the outputs to Excel'. A simple interface for fitting survival models using flexsurv::flexsurvreg(), flexsurv::flexsurvspline(), flexsurvcure::flexsurvcure(), and survival::survreg().
The cointegration based support vector regression model enables researchers to use data obtained from the cointegrating vector as input in the support vector regression model.
This package contains several functions for equivalence testing and practical significance testing. First, the tsti() command provides an automatic computation of three-sided testing results for a given estimate, standard error, and region of practical equivalence. For details, see Goeman, Solari, & Stijnen (2010) <doi:10.1002/sim.4002> and Isager & Fitzgerald (2024) <doi:10.31234/osf.io/8y925>. Second, the lddtest() command performs logarithmic density discontinuity equivalence testing for regression discontinuity designs. For reference, see Fitzgerald (2025) <doi:10.31222/osf.io/2dgrp_v1>.
Estimates extinction risk from population time series under a drifted Wiener process using the w-z method for accurate confidence intervals.
This package provides functions that help with analysis of prognostic study data. This allows users with little experience of developing models to develop models and assess the performance of the prognostic models. This also summarises the information, so the performance of multiple models can be displayed simultaneously. This minor update fixes issues related to memory requirements with large number of simulations and deals with situations when there is overfitting of data. Gurusamy, K (2026)<https://github.com/kurinchi2k/EQUALPrognosis>.
This package provides a system for importing electrophysiological signal, based on the Waveform Database (WFDB) software package, written by Moody et al 2022 <doi:10.13026/gjvw-1m31>. A R-based system to utilize WFDB functions for reading and writing signal data, as well as functions for visualization and analysis are provided. A stable and broadly compatible class for working with signal data, supporting the reading in of cardiac electrophysiological files such as intracardiac electrograms, is introduced.
Downloads a satellite image via ESRI and maptiles (these are originally from a variety of aerial photography sources), translates the image into a perceptually uniform color space, runs one of a few different clustering algorithms on the colors in the image searching for a user-supplied number of colors, and returns the resulting color palette.
Data for use with the Sage Introduction to Exponential Random Graph Modeling text by Jenine K. Harris. Network data set consists of 1283 local health departments and the communication links among them along with several attributes.
This package provides a toolbox for implementing the Ecological Dynamic Regime framework (Sánchez-Pinillos et al., 2023 <doi:10.1002/ecm.1589>) to characterize and compare groups of ecological trajectories in multidimensional spaces defined by state variables. The package includes the RETRA-EDR algorithm to identify representative trajectories, functions to generate, summarize, and visualize representative trajectories, and several metrics to quantify the distribution and heterogeneity of trajectories in an ecological dynamic regime and quantify the dissimilarity between two or more ecological dynamic regimes. The package also includes a set of functions to assess ecological resilience based on ecological dynamic regimes (Sánchez-Pinillos et al., 2024 <doi:10.1016/j.biocon.2023.110409>).
Survival analysis is employed to model time-to-event data. This package examines the relationship between survival and one or more predictors, termed as covariates, which can include both treatment variables (e.g., season of birth, represented by indicator functions) and continuous variables. To this end, the Cox-proportional hazard (Cox-PH) model, introduced by Cox in 1972, is a widely applicable and commonly used method for survival analysis. This package enables the estimation of the effect of randomization for the treatment variable to account for potential confounders, providing adjustment when estimating the association with exposure. It accommodates both fixed and time-dependent covariates and computes survival probabilities for lactation periods in dairy animals. The package is built upon the algorithm developed by Klein and Moeschberger (2003) <DOI:10.1007/b97377>.
Unsupervised, multivariate, binary clustering for meaningful annotation of data, taking into account the uncertainty in the data. A specific constructor for trajectory analysis in movement ecology yields behavioural annotation of trajectories based on estimated local measures of velocity and turning angle, eventually with solar position covariate as a daytime indicator, ("Expectation-Maximization Binary Clustering for Behavioural Annotation").
The basic use of this package is with 3 sequential functions. First to generate a cell mean matrix. In case of a repeated measurements design also generate correlation and covariance matrices. This is followed by iterative experiment simulation. Finally, power is calculated from the simulated data. Features that may be considered in the model are interaction, measure correlation, non-normal and unbalanced designs distributions.
End-member modelling analysis of grain-size data is an approach to unmix a data set's underlying distributions and their contribution to the data set. EMMAgeo provides deterministic and robust protocols for that purpose.