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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-hcg110cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hcg110cdf
Description:

This package provides a package containing an environment representing the HC_G110.cdf file.

r-harbchip 1.48.0
Propagated dependencies: r-iranges@2.44.0 r-biostrings@2.78.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/harbChIP
Licenses: Artistic License 2.0
Build system: r
Synopsis: Experimental Data Package: harbChIP
Description:

data from a yeast ChIP-chip experiment.

r-hmdbquery 1.30.0
Propagated dependencies: r-xml@3.99-0.20 r-s4vectors@0.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hmdbQuery
Licenses: Artistic License 2.0
Build system: r
Synopsis: utilities for exploration of human metabolome database
Description:

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

r-hummingbird 1.20.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-rcpp@1.1.0 r-iranges@2.44.0 r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hummingbird
Licenses: FSDG-compatible
Build system: r
Synopsis: Bayesian Hidden Markov Model for the detection of differentially methylated regions
Description:

This package provides a package for detecting differential methylation. It exploits a Bayesian hidden Markov model that incorporates location dependence among genomic loci, unlike most existing methods that assume independence among observations. Bayesian priors are applied to permit information sharing across an entire chromosome for improved power of detection. The direct output of our software package is the best sequence of methylation states, eliminating the use of a subjective, and most of the time an arbitrary, threshold of p-value for determining significance. At last, our methodology does not require replication in either or both of the two comparison groups.

r-humanomniexpress12v1bcrlmm 1.0.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomniexpress12v1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni Express 12 arrays using the crlmm package.

r-hdtd 1.44.0
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/AnestisTouloumis/HDTD
Licenses: GPL 3
Build system: r
Synopsis: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Description:

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

r-holofoodr 1.4.0
Propagated dependencies: r-treesummarizedexperiment@2.18.0 r-summarizedexperiment@1.40.0 r-stringi@1.8.7 r-s4vectors@0.48.0 r-multiassayexperiment@1.36.1 r-jsonlite@2.0.0 r-httr2@1.2.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/EBI-Metagenomics/HoloFoodR
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: R interface to EBI HoloFood resource
Description:

Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.

r-hdxmsqc 1.6.0
Propagated dependencies: r-tidyr@1.3.1 r-spectra@1.20.0 r-s4vectors@0.48.0 r-qfeatures@1.20.0 r-mscoreutils@1.21.0 r-knitr@1.50 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-biocstyle@2.38.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/ococrook/hdxmsqc
Licenses: FSDG-compatible
Build system: r
Synopsis: An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Description:

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

r-hgudkfz31-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hguDKFZ31.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Unknown annotation data (chip hguDKFZ31)
Description:

Unknown annotation data (chip hguDKFZ31) assembled using data from public repositories.

r-hmp2data 1.24.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-readr@2.1.6 r-phyloseq@1.54.0 r-multiassayexperiment@1.36.1 r-magrittr@2.0.4 r-knitr@1.50 r-kableextra@1.4.0 r-experimenthub@3.0.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-assertthat@0.2.1 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/jstansfield0/HMP2Data
Licenses: Artistic License 2.0
Build system: r
Synopsis: 16s rRNA sequencing data from the Human Microbiome Project 2
Description:

HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.

r-harman 1.38.0
Propagated dependencies: r-rcpp@1.1.0 r-matrixstats@1.5.0 r-ckmeans-1d-dp@4.3.5
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinformatics.csiro.au/harman/
Licenses: FSDG-compatible
Build system: r
Synopsis: The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Description:

Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets, with the constraint that the probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is kept to a fraction which is set by the end-user.

r-hgu133bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\_probe\_tab.

r-hierinf 1.28.0
Propagated dependencies: r-glmnet@4.1-10 r-fmsb@0.7.6
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hierinf
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Hierarchical Inference
Description:

This package provides tools to perform hierarchical inference for one or multiple studies / data sets based on high-dimensional multivariate (generalised) linear models. A possible application is to perform hierarchical inference for GWA studies to find significant groups or single SNPs (if the signal is strong) in a data-driven and automated procedure. The method is based on an efficient hierarchical multiple testing correction and controls the FWER. The functions can easily be run in parallel.

r-hubmapr 1.4.0
Propagated dependencies: r-whisker@0.4.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-rlang@1.1.6 r-rjsoncons@1.3.2 r-purrr@1.2.0 r-httr2@1.2.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://christinehou11.github.io/HuBMAPR/
Licenses: Artistic License 2.0
Build system: r
Synopsis: Interface to 'HuBMAP'
Description:

HuBMAP provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.

r-hcg110probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hcg110
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HC-G110\_probe\_tab.

r-hu35ksubccdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu35ksubccdf
Description:

This package provides a package containing an environment representing the Hu35KsubC.CDF file.

r-hgug4111a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4111a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Human 1B annotation data (chip hgug4111a)
Description:

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.

r-hicdatahumanimr90 1.30.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HiCDataHumanIMR90
Licenses: GPL 3
Build system: r
Synopsis: Human IMR90 Fibroblast HiC data from Dixon et al. 2012
Description:

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

r-hspec 0.99.1
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hspec
Licenses: LGPL 2.0+
Build system: r
Synopsis: Hspec
Description:

This package provides a package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.

r-hgu133plus2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133plus2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133\_Plus\_2\_probe\_tab.

r-hivcdnavantwout03 1.50.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://expression.microslu.washington.edu/expression/vantwoutjvi2002.html
Licenses: GPL 2+
Build system: r
Synopsis: T cell line infections with HIV-1 LAI (BRU)
Description:

The expression levels of approximately 4600 cellular RNA transcripts were assessed in CD4+ T cell lines at different times after infection with HIV-1BRU using DNA microarrays. This data corresponds to the first block of a 12 block array image (001030_08_1.GEL) in the first data set (2000095918 A) in the first experiment (CEM LAI vs HI-LAI 24hr). There are two data sets, which are part of a dye-swap experiment with replicates, representing the Cy3 (green) absorption intensities for channel 1 (hiv1raw) and the Cy5 (red) absorption intensities for channel 2 (hiv2raw).

r-hiiragi2013 1.46.0
Propagated dependencies: r-xtable@1.8-4 r-rcolorbrewer@1.1-3 r-mouse4302-db@3.13.0 r-mass@7.3-65 r-latticeextra@0.6-31 r-lattice@0.22-7 r-keggrest@1.50.0 r-gtools@3.9.5 r-gplots@3.2.0 r-geneplotter@1.88.0 r-genefilter@1.92.0 r-cluster@2.1.8.1 r-clue@0.3-66 r-boot@1.3-32 r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hiiragi2013
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
Description:

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881.".

r-hspeccdf 0.99.1
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hspeccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hspeccdf
Description:

This package provides a package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.

r-htratfocusprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htratfocusprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type htratfocus
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_Rat-Focus\_probe\_tab.

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Total results: 68655