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r-pd-mirna-2-0 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.2.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-2_0
Description:

Platform Design Info for Affymetrix miRNA-2_0.

r-pd-clariom-s-mouse-ht 3.14.1
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.clariom.s.mouse.ht
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Clariom_S_Mouse_HT
Description:

Platform Design Info for Affymetrix Clariom_S_Mouse_HT.

r-pd-ath1-121501 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ath1.121501
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name ATH1-121501
Description:

Platform Design Info for The Manufacturer's Name ATH1-121501.

r-pmscanr 1.2.0
Dependencies: perl@5.36.0
Propagated dependencies: r-stringr@1.6.0 r-shinyfiles@0.9.3 r-shiny@1.13.0 r-seqinr@4.2-44 r-rtracklayer@1.72.0 r-rlang@1.2.0 r-reshape2@1.4.5 r-plotly@4.12.0 r-magrittr@2.0.5 r-ggseqlogo@0.2.2 r-ggplot2@4.0.3 r-dplyr@1.2.1 r-bslib@0.11.0 r-biocfilecache@3.2.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/prodakt/PMScanR
Licenses: GPL 3
Build system: r
Synopsis: Protein motifs analysis and visualisation
Description:

This package provides tools for large-scale protein motif analysis and visualization in R. PMScanR facilitates the identification of motifs using external tools like PROSITE's ps_scan (handling necessary file downloads and execution) and enables downstream analysis of results. Key features include parsing scan outputs, converting formats (e.g., to GFF-like structures), generating motif occurrence matrices, and creating informative visualizations such as heatmaps, sequence logos (via seqLogo/ggseqlogo). The package also offers an optional Shiny-based graphical user interface for interactive analysis, aiming to streamline the process of exploring motif patterns across multiple protein sequences.

r-pepxmltab 1.46.0
Propagated dependencies: r-xml@3.99-0.23
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pepXMLTab
Licenses: Artistic License 2.0
Build system: r
Synopsis: Parsing pepXML files and filter based on peptide FDR
Description:

Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.

r-pd-chicken 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.chicken
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Chicken
Description:

Platform Design Info for The Manufacturer's Name Chicken.

r-pgxrpi 1.7.0
Propagated dependencies: r-yaml@2.3.12 r-survminer@0.5.2 r-survival@3.8-6 r-summarizedexperiment@1.42.0 r-s4vectors@0.50.1 r-lubridate@1.9.5 r-httr@1.4.8 r-ggplot2@4.0.3 r-genomicranges@1.64.0 r-future-apply@1.20.2 r-future@1.70.0 r-dplyr@1.2.1 r-circlize@0.4.18 r-attempt@0.3.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/progenetix/pgxRpi
Licenses: Artistic License 2.0
Build system: r
Synopsis: R wrapper for Progenetix
Description:

The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix database—an open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.

r-pd-mogene-2-1-st 3.14.1
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mogene.2.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MoGene-2_1-st
Description:

Platform Design Info for Affymetrix MoGene-2_1-st.

r-pd-hg-u95av2 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95av2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95Av2
Description:

Platform Design Info for The Manufacturer's Name HG_U95Av2.

r-pd-chigene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.chigene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix ChiGene-1_0-st
Description:

Platform Design Info for Affymetrix ChiGene-1_0-st.

r-pd-rjpgene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rjpgene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RJpGene-1_1-st
Description:

Platform Design Info for Affymetrix RJpGene-1_1-st.

r-pd-hg18-60mer-expr 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg18.60mer.expr
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen hg18_60mer_expr
Description:

Platform Design Info for NimbleGen hg18_60mer_expr.

r-pgca 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pgca
Licenses: GPL 2+
Build system: r
Synopsis: PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
Description:

Protein Group Code Algorithm (PGCA) is a computationally inexpensive algorithm to merge protein summaries from multiple experimental quantitative proteomics data. The algorithm connects two or more groups with overlapping accession numbers. In some cases, pairwise groups are mutually exclusive but they may still be connected by another group (or set of groups) with overlapping accession numbers. Thus, groups created by PGCA from multiple experimental runs (i.e., global groups) are called "connected" groups. These identified global protein groups enable the analysis of quantitative data available for protein groups instead of unique protein identifiers.

r-pd-cyngene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cyngene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix CynGene-1_1-st
Description:

Platform Design Info for Affymetrix CynGene-1_1-st.

r-pd-clariom-s-mouse 3.14.1
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.clariom.s.mouse
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Clariom_S_Mouse
Description:

Platform Design Info for Affymetrix Clariom_S_Mouse.

r-padma 1.22.0
Propagated dependencies: r-summarizedexperiment@1.42.0 r-s4vectors@0.50.1 r-multiassayexperiment@1.38.0 r-factominer@2.14
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/andreamrau/padma
Licenses: GPL 3+
Build system: r
Synopsis: Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis
Description:

Use multiple factor analysis to calculate individualized pathway-centric scores of deviation with respect to the sampled population based on multi-omic assays (e.g., RNA-seq, copy number alterations, methylation, etc). Graphical and numerical outputs are provided to identify highly aberrant individuals for a particular pathway of interest, as well as the gene and omics drivers of aberrant multi-omic profiles.

r-prostatecancercamcap 1.40.0
Propagated dependencies: r-biobase@2.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prostateCancerCamcap
Licenses: Artistic License 2.0
Build system: r
Synopsis: Prostate Cancer Data
Description:

This package provides a Bioconductor data package for the Ross-Adams (2015) Prostate Cancer dataset.

r-pd-2006-07-18-hg18-refseq-promoter 1.8.1
Propagated dependencies: r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.2006.07.18.hg18.refseq.promoter
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter
Description:

Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter.

r-prodata 1.50.0
Propagated dependencies: r-biobase@2.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/ProData
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: SELDI-TOF data of Breast cancer samples
Description:

This package provides a data package of SELDI-TOF protein mass spectrometry data of 167 breast cancer and normal samples.

r-pd-margene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.margene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MarGene-1_0-st
Description:

Platform Design Info for Affymetrix MarGene-1_0-st.

r-pd-poplar 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.poplar
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Poplar
Description:

Platform Design Info for The Manufacturer's Name Poplar.

r-paeg1aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/paeg1aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type paeg1a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was P\_aeg1a\_probe\_tab.

r-pd-hg-u219 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u219
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U219
Description:

Platform Design Info for The Manufacturer's Name HG-U219.

r-pd-vitis-vinifera 3.12.0
Propagated dependencies: r-s4vectors@0.50.1 r-rsqlite@3.52.0 r-oligoclasses@1.74.0 r-oligo@1.76.0 r-iranges@2.46.0 r-dbi@1.3.0 r-biostrings@2.80.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.vitis.vinifera
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Vitis_Vinifera
Description:

Platform Design Info for The Manufacturer's Name Vitis_Vinifera.

Total packages: 72714