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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-hu35ksubaprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubaprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type hu35ksuba
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubA\_probe\_tab.

r-hu35ksubbprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubbprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type hu35ksubb
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubB\_probe\_tab.

r-hummingbird 1.20.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-rcpp@1.1.0 r-iranges@2.44.0 r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hummingbird
Licenses: FSDG-compatible
Synopsis: Bayesian Hidden Markov Model for the detection of differentially methylated regions
Description:

This package provides a package for detecting differential methylation. It exploits a Bayesian hidden Markov model that incorporates location dependence among genomic loci, unlike most existing methods that assume independence among observations. Bayesian priors are applied to permit information sharing across an entire chromosome for improved power of detection. The direct output of our software package is the best sequence of methylation states, eliminating the use of a subjective, and most of the time an arbitrary, threshold of p-value for determining significance. At last, our methodology does not require replication in either or both of the two comparison groups.

r-herper 1.20.0
Propagated dependencies: r-withr@3.0.2 r-rjson@0.2.23 r-reticulate@1.44.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/RockefellerUniversity/Herper
Licenses: GPL 3
Synopsis: The Herper package is a simple toolset to install and manage conda packages and environments from R
Description:

Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.

r-hgu95acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95acdf
Licenses: LGPL 2.0+
Synopsis: hgu95acdf
Description:

This package provides a package containing an environment representing the HG_U95A.CDF file.

r-huexexonprobesetlocation 1.15.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HuExExonProbesetLocation
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type HuEx
Description:

This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.

r-htmg430aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430aprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type htmg430a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430A\_probe\_tab.

r-htrat230pmcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htrat230pmcdf
Licenses: LGPL 2.0+
Synopsis: htrat230pmcdf
Description:

This package provides a package containing an environment representing the HT_Rat230_PM.cdf file.

r-harbchip 1.48.0
Propagated dependencies: r-iranges@2.44.0 r-biostrings@2.78.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/harbChIP
Licenses: Artistic License 2.0
Synopsis: Experimental Data Package: harbChIP
Description:

data from a yeast ChIP-chip experiment.

r-hgu95eprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95eprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type hgu95e
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95E\_probe\_tab.

r-hicontacts 1.12.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-scales@1.4.0 r-s4vectors@0.48.0 r-rspectra@0.16-2 r-readr@2.1.6 r-matrix@1.7-4 r-iranges@2.44.0 r-interactionset@1.38.0 r-hicexperiment@1.10.0 r-ggrastr@1.0.2 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-dplyr@1.1.4 r-biocparallel@1.44.0 r-biocio@1.20.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/js2264/HiContacts
Licenses: Expat
Synopsis: Analysing cool files in R with HiContacts
Description:

HiContacts provides a collection of tools to analyse and visualize Hi-C datasets imported in R by HiCExperiment.

r-hdxmsqc 1.6.0
Propagated dependencies: r-tidyr@1.3.1 r-spectra@1.20.0 r-s4vectors@0.48.0 r-qfeatures@1.20.0 r-mscoreutils@1.21.0 r-knitr@1.50 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-biocstyle@2.38.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/ococrook/hdxmsqc
Licenses: FSDG-compatible
Synopsis: An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Description:

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

r-htsfilter 1.50.0
Propagated dependencies: r-edger@4.8.0 r-deseq2@1.50.2 r-biocparallel@1.44.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HTSFilter
Licenses: Artistic License 2.0
Synopsis: Filter replicated high-throughput transcriptome sequencing data
Description:

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

r-hdtd 1.44.0
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/AnestisTouloumis/HDTD
Licenses: GPL 3
Synopsis: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Description:

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

r-hthgu133aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133aprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type hthgu133a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_HG-U133A\_probe\_tab.

r-hcg110-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110.db
Licenses: Artistic License 2.0
Synopsis: Affymetrix Affymetrix HC_G110 Array annotation data (chip hcg110)
Description:

Affymetrix Affymetrix HC_G110 Array annotation data (chip hcg110) assembled using data from public repositories.

r-hicdcplus 1.18.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-rlang@1.1.6 r-rcpp@1.1.0 r-r-utils@2.13.0 r-pscl@1.5.9 r-mass@7.3-65 r-iranges@2.44.0 r-interactionset@1.38.0 r-genomicranges@1.62.0 r-genomicinteractions@1.44.0 r-genomeinfodb@1.46.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-bbmle@1.0.25.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HiCDCPlus
Licenses: GPL 3
Synopsis: Hi-C Direct Caller Plus
Description:

Systematic 3D interaction calls and differential analysis for Hi-C and HiChIP. The HiC-DC+ (Hi-C/HiChIP direct caller plus) package enables principled statistical analysis of Hi-C and HiChIP data sets – including calling significant interactions within a single experiment and performing differential analysis between conditions given replicate experiments – to facilitate global integrative studies. HiC-DC+ estimates significant interactions in a Hi-C or HiChIP experiment directly from the raw contact matrix for each chromosome up to a specified genomic distance, binned by uniform genomic intervals or restriction enzyme fragments, by training a background model to account for random polymer ligation and systematic sources of read count variation.

r-hthgu133a-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133a.db
Licenses: Artistic License 2.0
Synopsis: Affymetrix Affymetrix HT_HG-U133A Array annotation data (chip hthgu133a)
Description:

Affymetrix Affymetrix HT_HG-U133A Array annotation data (chip hthgu133a) assembled using data from public repositories.

r-hthgu133plusa-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133plusa.db
Licenses: Artistic License 2.0
Synopsis: Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa)
Description:

Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa) assembled using data from public repositories.

r-hgc 1.18.0
Propagated dependencies: r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-rann@2.6.2 r-patchwork@1.3.2 r-mclust@6.1.2 r-matrix@1.7-4 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-dendextend@1.19.1 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HGC
Licenses: GPL 3
Synopsis: fast hierarchical graph-based clustering method
Description:

HGC (short for Hierarchical Graph-based Clustering) is an R package for conducting hierarchical clustering on large-scale single-cell RNA-seq (scRNA-seq) data. The key idea is to construct a dendrogram of cells on their shared nearest neighbor (SNN) graph. HGC provides functions for building graphs and for conducting hierarchical clustering on the graph. The users with old R version could visit https://github.com/XuegongLab/HGC/tree/HGC4oldRVersion to get HGC package built for R 3.6.

r-hgug4112a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4112a.db
Licenses: Artistic License 2.0
Synopsis: Agilent "Human Genome, Whole" annotation data (chip hgug4112a)
Description:

Agilent "Human Genome, Whole" annotation data (chip hgug4112a) assembled using data from public repositories.

r-hugene20sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene20sttranscriptcluster.db
Licenses: Artistic License 2.0
Synopsis: Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster)
Description:

Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster) assembled using data from public repositories.

r-humanaffydata 1.36.0
Propagated dependencies: r-experimenthub@3.0.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HumanAffyData
Licenses: Artistic License 2.0
Synopsis: GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects
Description:

Re-analysis of human gene expression data generated on the Affymetrix HG_U133PlusV2 (EH176) and Affymetrix HG_U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.

r-hicexperiment 1.10.0
Propagated dependencies: r-vroom@1.6.6 r-strawr@0.0.92 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rhdf5@2.54.0 r-matrix@1.7-4 r-iranges@2.44.0 r-interactionset@1.38.0 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-biocparallel@1.44.0 r-biocio@1.20.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/js2264/HiCExperiment
Licenses: Expat
Synopsis: Bioconductor class for interacting with Hi-C files in R
Description:

R generic interface to Hi-C contact matrices in `.(m)cool`, `.hic` or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The `HiCExperiment` class stores the Hi-C contacts parsed from local contact matrix files. `HiCExperiment` instances can be further investigated in R using the `HiContacts` analysis package.

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Total results: 68249