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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-methylimp2 1.6.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-corpcor@1.6.10 r-champdata@2.42.0 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/annaplaksienko/methyLImp2
Licenses: GPL 3
Build system: r
Synopsis: Missing value estimation of DNA methylation data
Description:

This package allows to estimate missing values in DNA methylation data. methyLImp method is based on linear regression since methylation levels show a high degree of inter-sample correlation. Implementation is parallelised over chromosomes since probes on different chromosomes are usually independent. Mini-batch approach to reduce the runtime in case of large number of samples is available.

r-mouse4302frmavecs 1.5.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302frmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type mouse4302
Description:

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

r-mygene 1.46.0
Propagated dependencies: r-txdbmaker@1.6.0 r-sqldf@0.4-11 r-s4vectors@0.48.0 r-plyr@1.8.9 r-jsonlite@2.0.0 r-httr@1.4.7 r-hmisc@5.2-4 r-genomicfeatures@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mygene
Licenses: Artistic License 2.0
Build system: r
Synopsis: Access MyGene.Info_ services
Description:

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

r-msqrob2 1.18.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-qfeatures@1.20.0 r-purrr@1.2.0 r-multiassayexperiment@1.36.1 r-matrix@1.7-4 r-mass@7.3-65 r-lme4@1.1-37 r-limma@3.66.0 r-codetools@0.2-20 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/statOmics/msqrob2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Robust statistical inference for quantitative LC-MS proteomics
Description:

msqrob2 provides a robust linear mixed model framework for assessing differential abundance in MS-based Quantitative proteomics experiments. Our workflows can start from raw peptide intensities or summarised protein expression values. The model parameter estimates can be stabilized by ridge regression, empirical Bayes variance estimation and robust M-estimation. msqrob2's hurde workflow can handle missing data without having to rely on hard-to-verify imputation assumptions, and, outcompetes state-of-the-art methods with and without imputation for both high and low missingness. It builds on QFeature infrastructure for quantitative mass spectrometry data to store the model results together with the raw data and preprocessed data.

r-mulcom 1.60.0
Propagated dependencies: r-fields@17.1 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/Mulcom
Licenses: GPL 2
Build system: r
Synopsis: Calculates Mulcom test
Description:

Identification of differentially expressed genes and false discovery rate (FDR) calculation by Multiple Comparison test.

r-monalisa 1.16.0
Propagated dependencies: r-xvector@0.50.0 r-tidyr@1.3.1 r-tfbstools@1.48.0 r-summarizedexperiment@1.40.0 r-stabs@0.6-4 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-rlang@1.1.6 r-iranges@2.44.0 r-glmnet@4.1-10 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-complexheatmap@2.26.0 r-cli@3.6.5 r-circlize@0.4.16 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/fmicompbio/monaLisa
Licenses: GPL 3+
Build system: r
Synopsis: Binned Motif Enrichment Analysis and Visualization
Description:

Useful functions to work with sequence motifs in the analysis of genomics data. These include methods to annotate genomic regions or sequences with predicted motif hits and to identify motifs that drive observed changes in accessibility or expression. Functions to produce informative visualizations of the obtained results are also provided.

r-multimodalexperiment 1.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-multiassayexperiment@1.36.1 r-iranges@2.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MultimodalExperiment
Licenses: Artistic License 2.0
Build system: r
Synopsis: Integrative Bulk and Single-Cell Experiment Container
Description:

MultimodalExperiment is an S4 class that integrates bulk and single-cell experiment data; it is optimally storage-efficient, and its methods are exceptionally fast. It effortlessly represents multimodal data of any nature and features normalized experiment, subject, sample, and cell annotations, which are related to underlying biological experiments through maps. Its coordination methods are opt-in and employ database-like join operations internally to deliver fast and flexible management of multimodal data.

r-moe430acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: moe430acdf
Description:

This package provides a package containing an environment representing the MOE430A.CDF file.

r-multistateqtl 2.2.0
Propagated dependencies: r-viridis@0.6.5 r-tidyr@1.3.1 r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-qtlexperiment@2.2.0 r-matrixstats@1.5.0 r-mashr@0.2.79 r-ggplot2@4.0.1 r-fitdistrplus@1.2-4 r-dplyr@1.1.4 r-data-table@1.17.8 r-complexheatmap@2.26.0 r-collapse@2.1.5 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/dunstone-a/multistateQTL
Licenses: GPL 3
Build system: r
Synopsis: Toolkit for the analysis of multi-state QTL data
Description:

This package provides a collection of tools for doing various analyses of multi-state QTL data, with a focus on visualization and interpretation. The package multistateQTL contains functions which can remove or impute missing data, identify significant associations, as well as categorise features into global, multi-state or unique. The analysis results are stored in a QTLExperiment object, which is based on the SummarisedExperiment framework.

r-mgu74bv2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bv2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mgu74bv2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Bv2\_probe\_tab.

r-mgug4122a-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgug4122a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a)
Description:

Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a) assembled using data from public repositories.

r-mu15v1-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/Mu15v1.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)
Description:

FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1) assembled using data from public repositories.

r-miatime 1.0.0
Propagated dependencies: r-treesummarizedexperiment@2.18.0 r-tidyr@1.3.1 r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-s4vectors@0.48.0 r-mia@1.18.0 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/microbiome/miaTime
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: Microbiome Time Series Analysis
Description:

The `miaTime` package provides tools for microbiome time series analysis based on (Tree)SummarizedExperiment infrastructure.

r-muscle 3.52.0
Propagated dependencies: r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://www.drive5.com/muscle/
Licenses: FSDG-compatible
Build system: r
Synopsis: Multiple Sequence Alignment with MUSCLE
Description:

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

r-mgu74b-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix MG_U74B Array annotation data (chip mgu74b)
Description:

Affymetrix Affymetrix MG_U74B Array annotation data (chip mgu74b) assembled using data from public repositories.

r-mafdb-exac-r1-0-nontcga-grch38 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.ExAC.r1.0.nonTCGA.GRCh38
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for GRCh38
Description:

Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version GRCh38.

r-mwgcod-db 3.4.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mwgcod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod)
Description:

Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod) assembled using data from public repositories.

r-mdp 1.30.0
Propagated dependencies: r-gridextra@2.3 r-ggplot2@4.0.1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://mdp.sysbio.tools/
Licenses: GPL 3
Build system: r
Synopsis: Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
Description:

The Molecular Degree of Perturbation webtool quantifies the heterogeneity of samples. It takes a data.frame of omic data that contains at least two classes (control and test) and assigns a score to all samples based on how perturbed they are compared to the controls. It is based on the Molecular Distance to Health (Pankla et al. 2009), and expands on this algorithm by adding the options to calculate the z-score using the modified z-score (using median absolute deviation), change the z-score zeroing threshold, and look at genes that are most perturbed in the test versus control classes.

r-mosaics 2.48.0
Dependencies: perl@5.36.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-rcpp@1.1.0 r-mass@7.3-65 r-lattice@0.22-7 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicalignments@1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://groups.google.com/group/mosaics_user_group
Licenses: GPL 2+
Build system: r
Synopsis: MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Description:

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

r-methinheritsim 1.32.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-msm@1.8.2 r-methylkit@1.36.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/belleau/methInheritSim
Licenses: Artistic License 2.0
Build system: r
Synopsis: Simulating Whole-Genome Inherited Bisulphite Sequencing Data
Description:

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

r-metaboannotation 1.14.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-spectra@1.20.0 r-s4vectors@0.48.0 r-qfeatures@1.20.0 r-protgenerics@1.42.0 r-mscoreutils@1.21.0 r-metabocoreutils@1.18.1 r-compounddb@1.14.2 r-biocparallel@1.44.0 r-biocgenerics@0.56.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/RforMassSpectrometry/MetaboAnnotation
Licenses: Artistic License 2.0
Build system: r
Synopsis: Utilities for Annotation of Metabolomics Data
Description:

High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data.

r-mogene10stv1cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene10stv1cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mogene10stv1cdf
Description:

This package provides a package containing an environment representing the MoGene-1_0-st-v1.cdf file.

r-mu19ksubb-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu19ksubb.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Mu19KsubB Array annotation data (chip mu19ksubb)
Description:

Affymetrix Affymetrix Mu19KsubB Array annotation data (chip mu19ksubb) assembled using data from public repositories.

r-marinerdata 1.10.0
Propagated dependencies: r-experimenthub@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/marinerData
Licenses: GPL 3
Build system: r
Synopsis: ExperimentHub data for the mariner package
Description:

Subsampled Hi-C in HEK cells expressing the NHA9 fusion with an F to S mutated IDR ("FS") or without any mutations to the IDR ("Wildtype" or "WT"). These files are used for testing mariner functions and some examples.

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Total results: 68655