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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pandar 1.42.0
Propagated dependencies: r-runit@0.4.33 r-reshape@0.8.9 r-plyr@1.8.9 r-matrixstats@1.5.0 r-igraph@2.1.4 r-hexbin@1.28.5 r-ggplot2@3.5.2 r-biocgenerics@0.54.0 r-biobase@2.68.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pandaR
Licenses: GPL 2
Synopsis: PANDA Algorithm
Description:

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

r-phosphonormalizer 1.34.0
Propagated dependencies: r-plyr@1.8.9 r-matrixstats@1.5.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/phosphonormalizer
Licenses: GPL 2+
Synopsis: Compensates for the bias introduced by median normalization in
Description:

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

r-pd-zebgene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.zebgene.1.1.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix ZebGene-1_1-st
Description:

Platform Design Info for Affymetrix ZebGene-1_1-st.

r-pd-clariom-d-human 3.14.1
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.clariom.d.human
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix Clariom_D_Human
Description:

Platform Design Info for Affymetrix Clariom_D_Human.

r-phantasus 1.30.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://alserglab.wustl.edu/phantasus
Licenses: Expat
Synopsis: Visual and interactive gene expression analysis
Description:

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

r-pd-plasmodium-anopheles 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.plasmodium.anopheles
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles
Description:

Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles.

r-pd-ovigene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ovigene.1.1.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix OviGene-1_1-st
Description:

Platform Design Info for Affymetrix OviGene-1_1-st.

r-past 1.26.0
Propagated dependencies: r-s4vectors@0.46.0 r-rtracklayer@1.68.0 r-rlang@1.1.6 r-qvalue@2.40.0 r-iterators@1.0.14 r-ggplot2@3.5.2 r-genomicranges@1.60.0 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/IGBB/past
Licenses: FSDG-compatible
Synopsis: Pathway Association Study Tool (PAST)
Description:

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

r-pepsettest 1.4.0
Propagated dependencies: r-tibble@3.2.1 r-summarizedexperiment@1.38.1 r-reshape2@1.4.4 r-matrixstats@1.5.0 r-mass@7.3-65 r-lme4@1.1-37 r-limma@3.64.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/JmWangBio/PepSetTest
Licenses: GPL 3+
Synopsis: Peptide Set Test
Description:

Peptide Set Test (PepSetTest) is a peptide-centric strategy to infer differentially expressed proteins in LC-MS/MS proteomics data. This test detects coordinated changes in the expression of peptides originating from the same protein and compares these changes against the rest of the peptidome. Compared to traditional aggregation-based approaches, the peptide set test demonstrates improved statistical power, yet controlling the Type I error rate correctly in most cases. This test can be valuable for discovering novel biomarkers and prioritizing drug targets, especially when the direct application of statistical analysis to protein data fails to provide substantial insights.

r-pd-x-laevis-2 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.x.laevis.2
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name X_laevis_2
Description:

Platform Design Info for The Manufacturer's Name X_laevis_2.

r-pd-hg-u133a-2 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133a.2
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133A_2
Description:

Platform Design Info for The Manufacturer's Name HG-U133A_2.

r-pd-barley1 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.barley1
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Barley1
Description:

Platform Design Info for The Manufacturer's Name Barley1.

r-purecn 2.16.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/lima1/PureCN
Licenses: Artistic License 2.0
Synopsis: Copy number calling and SNV classification using targeted short read sequencing
Description:

This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.

r-pathnet 1.50.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PathNet
Licenses: GPL 3
Synopsis: An R package for pathway analysis using topological information
Description:

PathNet uses topological information present in pathways and differential expression levels of genes (obtained from microarray experiment) to identify pathways that are 1) significantly enriched and 2) associated with each other in the context of differential expression. The algorithm is described in: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J. Source Code for Biology and Medicine 2012 Sep 24;7(1):10.

r-proda 1.24.0
Propagated dependencies: r-summarizedexperiment@1.38.1 r-s4vectors@0.46.0 r-extradistr@1.10.0 r-biocgenerics@0.54.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/const-ae/proDA
Licenses: GPL 3
Synopsis: Differential Abundance Analysis of Label-Free Mass Spectrometry Data
Description:

Account for missing values in label-free mass spectrometry data without imputation. The package implements a probabilistic dropout model that ensures that the information from observed and missing values are properly combined. It adds empirical Bayesian priors to increase power to detect differentially abundant proteins.

r-profilescoredist 1.38.0
Propagated dependencies: r-rcpp@1.0.14 r-biocgenerics@0.54.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/profileScoreDist
Licenses: Expat
Synopsis: Profile score distributions
Description:

Regularization and score distributions for position count matrices.

r-prebsdata 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prebsdata
Licenses: Artistic License 2.0
Synopsis: Data for 'prebs' package
Description:

This package contains data required to run examples in prebs package. The data files include: 1) Small sample bam files for demonstration purposes 2) Probe sequence mappings for Custom CDF (taken from http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp) 3) Probe sequence mappings for manufacturer's CDF (manually created using bowtie).

r-pd-elegene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.elegene.1.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix EleGene-1_0-st
Description:

Platform Design Info for Affymetrix EleGene-1_0-st.

r-pd-hg-u133a-tag 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133a.tag
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133A_tag
Description:

Platform Design Info for The Manufacturer's Name HG-U133A_tag.

r-partheenmetadata-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PartheenMetaData.db
Licenses: Artistic License 2.0
Synopsis: PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)
Description:

PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) assembled using data from public repositories.

r-pagerank 1.20.0
Propagated dependencies: r-motifmatchr@1.30.0 r-igraph@2.1.4 r-genomicranges@1.60.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/hd2326/pageRank
Licenses: GPL 2
Synopsis: Temporal and Multiplex PageRank for Gene Regulatory Network Analysis
Description:

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

r-prolocgui 2.20.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/lgatto/pRolocGUI
Licenses: GPL 2
Synopsis: Interactive visualisation of spatial proteomics data
Description:

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

r-pd-ecoli 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ecoli
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Ecoli
Description:

Platform Design Info for The Manufacturer's Name Ecoli.

r-polytect 1.2.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/emmachenlingo/Polytect
Licenses: Artistic License 2.0
Synopsis: An R package for digital data clustering
Description:

Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.

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