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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-proloc 1.50.0
Propagated dependencies: r-scales@1.4.0 r-sampling@2.10 r-rcpparmadillo@14.4.3-1 r-rcpp@1.0.14 r-rcolorbrewer@1.1-3 r-randomforest@4.7-1.2 r-proxy@0.4-27 r-plyr@1.8.9 r-nnet@7.3-20 r-mvtnorm@1.3-3 r-msnbase@2.34.1 r-mlinterfaces@1.88.1 r-mixtools@2.0.0.1 r-mclust@6.1.1 r-mass@7.3-65 r-lattice@0.22-7 r-laplacesdemon@16.1.6 r-knitr@1.50 r-kernlab@0.9-33 r-hexbin@1.28.5 r-gtools@3.9.5 r-ggplot2@3.5.2 r-fnn@1.1.4.1 r-e1071@1.7-16 r-dendextend@1.19.0 r-colorspace@2.1-1 r-coda@0.19-4.1 r-class@7.3-23 r-caret@7.0-1 r-biomart@2.64.0 r-biocparallel@1.42.0 r-biocgenerics@0.54.0 r-biobase@2.68.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/lgatto/pRoloc
Licenses: GPL 2
Synopsis: unifying bioinformatics framework for spatial proteomics
Description:

The pRoloc package implements machine learning and visualisation methods for the analysis and interogation of quantitiative mass spectrometry data to reliably infer protein sub-cellular localisation.

r-pvca 1.50.0
Propagated dependencies: r-vsn@3.76.0 r-matrix@1.7-3 r-lme4@1.1-37 r-biobase@2.68.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pvca
Licenses: LGPL 2.0+
Synopsis: Principal Variance Component Analysis (PVCA)
Description:

This package contains the function to assess the batch sourcs by fitting all "sources" as random effects including two-way interaction terms in the Mixed Model(depends on lme4 package) to selected principal components, which were obtained from the original data correlation matrix. This package accompanies the book "Batch Effects and Noise in Microarray Experiements, chapter 12.

r-pd-rhegene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rhegene.1.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix RheGene-1_0-st
Description:

Platform Design Info for Affymetrix RheGene-1_0-st.

r-ppinfer 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PPInfer
Licenses: Artistic License 2.0
Synopsis: Inferring functionally related proteins using protein interaction networks
Description:

Interactions between proteins occur in many, if not most, biological processes. Most proteins perform their functions in networks associated with other proteins and other biomolecules. This fact has motivated the development of a variety of experimental methods for the identification of protein interactions. This variety has in turn ushered in the development of numerous different computational approaches for modeling and predicting protein interactions. Sometimes an experiment is aimed at identifying proteins closely related to some interesting proteins. A network based statistical learning method is used to infer the putative functions of proteins from the known functions of its neighboring proteins on a PPI network. This package identifies such proteins often involved in the same or similar biological functions.

r-paeg1acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/paeg1acdf
Licenses: LGPL 2.0+
Synopsis: paeg1acdf
Description:

This package provides a package containing an environment representing the Pae_G1a.CDF file.

r-phosr 1.20.0
Propagated dependencies: r-tidyr@1.3.1 r-summarizedexperiment@1.38.1 r-stringi@1.8.7 r-s4vectors@0.46.0 r-ruv@0.9.7.1 r-rlang@1.1.6 r-reshape2@1.4.4 r-rcolorbrewer@1.1-3 r-preprocesscore@1.70.0 r-pheatmap@1.0.12 r-pcamethods@2.0.0 r-network@1.19.0 r-limma@3.64.1 r-igraph@2.1.4 r-ggtext@0.1.2 r-ggpubr@0.6.0 r-ggplot2@3.5.2 r-ggdendro@0.2.0 r-ggally@2.2.1 r-e1071@1.7-16 r-dplyr@1.1.4 r-dendextend@1.19.0 r-circlize@0.4.16 r-biocgenerics@0.54.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PhosR
Licenses: FSDG-compatible
Synopsis: set of methods and tools for comprehensive analysis of phosphoproteomics data
Description:

PhosR is a package for the comprenhensive analysis of phosphoproteomic data. There are two major components to PhosR: processing and downstream analysis. PhosR consists of various processing tools for phosphoproteomics data including filtering, imputation, normalisation, and functional analysis for inferring active kinases and signalling pathways.

r-pd-hg-u95e 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95e
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95E
Description:

Platform Design Info for The Manufacturer's Name HG_U95E.

r-pd-chogene-2-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.chogene.2.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix CHOGene-2_0-st
Description:

Platform Design Info for Affymetrix CHOGene-2_0-st.

r-pd-canine 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.canine
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Canine
Description:

Platform Design Info for The Manufacturer's Name Canine.

r-pd-zebgene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.zebgene.1.1.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix ZebGene-1_1-st
Description:

Platform Design Info for Affymetrix ZebGene-1_1-st.

r-pd-mirna-1-0 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.1.0
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name miRNA-1_0
Description:

Platform Design Info for The Manufacturer's Name miRNA-1_0.

r-pathnetdata 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PathNetData
Licenses: GPL 3
Synopsis: Experimental data for the PathNet package
Description:

This package contains the data employed in the vignette of the PathNet package. These data belong to the following publication: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J., Source Code for Biology and Medicine 2012 Sep 24;7(1):10.

r-past 1.26.0
Propagated dependencies: r-s4vectors@0.46.0 r-rtracklayer@1.68.0 r-rlang@1.1.6 r-qvalue@2.40.0 r-iterators@1.0.14 r-ggplot2@3.5.2 r-genomicranges@1.60.0 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/IGBB/past
Licenses: FSDG-compatible
Synopsis: Pathway Association Study Tool (PAST)
Description:

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

r-pmscanr 1.0.1
Dependencies: perl@5.36.0
Propagated dependencies: r-stringr@1.5.1 r-shinyfiles@0.9.3 r-shiny@1.10.0 r-seqinr@4.2-36 r-rtracklayer@1.68.0 r-rlang@1.1.6 r-reshape2@1.4.4 r-plotly@4.10.4 r-magrittr@2.0.3 r-ggseqlogo@0.2 r-ggplot2@3.5.2 r-dplyr@1.1.4 r-bslib@0.9.0 r-biocfilecache@2.16.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/prodakt/PMScanR
Licenses: GPL 3
Synopsis: Protein motifs analysis and visualisation
Description:

This package provides tools for large-scale protein motif analysis and visualization in R. PMScanR facilitates the identification of motifs using external tools like PROSITE's ps_scan (handling necessary file downloads and execution) and enables downstream analysis of results. Key features include parsing scan outputs, converting formats (e.g., to GFF-like structures), generating motif occurrence matrices, and creating informative visualizations such as heatmaps, sequence logos (via seqLogo/ggseqlogo). The package also offers an optional Shiny-based graphical user interface for interactive analysis, aiming to streamline the process of exploring motif patterns across multiple protein sequences.

r-pd-ecoli-asv2 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ecoli.asv2
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Ecoli_ASv2
Description:

Platform Design Info for The Manufacturer's Name Ecoli_ASv2.

r-pd-hu6800 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hu6800
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Hu6800
Description:

Platform Design Info for The Manufacturer's Name Hu6800.

r-pd-fingene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.fingene.1.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix FinGene-1_0-st
Description:

Platform Design Info for Affymetrix FinGene-1_0-st.

r-panther-db 1.0.12
Propagated dependencies: r-rsqlite@2.3.11 r-biocfilecache@2.16.0 r-annotationhub@3.16.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PANTHER.db
Licenses: Artistic License 2.0
Synopsis: set of annotation maps describing the entire PANTHER Gene Ontology
Description:

This package provides a set of annotation maps describing the entire Gene Ontology assembled using data from PANTHER.

r-pd-mirna-3-1 3.8.1
Propagated dependencies: r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.3.1
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix miRNA-3_1
Description:

Platform Design Info for Affymetrix miRNA-3_1.

r-pd-rhesus 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rhesus
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Rhesus
Description:

Platform Design Info for The Manufacturer's Name Rhesus.

r-pd-ht-hg-u133-plus-pm 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ht.hg.u133.plus.pm
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM
Description:

Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM.

r-pcan 1.38.0
Propagated dependencies: r-biocparallel@1.42.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PCAN
Licenses: FSDG-compatible
Synopsis: Phenotype Consensus ANalysis (PCAN)
Description:

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

r-panp 1.80.0
Propagated dependencies: r-biobase@2.68.0 r-affy@1.86.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/panp
Licenses: GPL 2+
Synopsis: Presence-Absence Calls from Negative Strand Matching Probesets
Description:

This package provides a function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

r-phenotest 1.58.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/phenoTest
Licenses: FSDG-compatible
Synopsis: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation
Description:

This package provides tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.

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Total results: 45109