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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-pumadata 2.46.0
Propagated dependencies: r-puma@3.52.0 r-oligo@1.74.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://umber.sbs.man.ac.uk/resources/puma
Licenses: LGPL 2.0+
Build system: r
Synopsis: Various data sets for use with the puma package
Description:

This is a simple data package including various data sets derived from the estrogen data for use with the puma (Propagating Uncertainty in Microarray Analysis) package.

r-pd-hg-u133a-2 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133a.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133A_2
Description:

Platform Design Info for The Manufacturer's Name HG-U133A_2.

r-pd-ovigene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ovigene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix OviGene-1_0-st
Description:

Platform Design Info for Affymetrix OviGene-1_0-st.

r-pqsfinder 2.26.0
Propagated dependencies: r-s4vectors@0.48.0 r-rcpp@1.1.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-biostrings@2.78.0 r-bh@1.87.0-1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://pqsfinder.fi.muni.cz
Licenses: FreeBSD
Build system: r
Synopsis: Identification of potential quadruplex forming sequences
Description:

Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.

r-phyloprofile 2.2.2
Propagated dependencies: r-zoo@1.8-14 r-yaml@2.3.10 r-xml2@1.5.0 r-umap@0.2.10.0 r-tsne@0.1-3.1 r-svglite@2.2.2 r-stringr@1.6.0 r-shinyjs@2.1.0 r-shinyfiles@0.9.3 r-shinycssloaders@1.1.0 r-shiny@1.11.1 r-scattermore@1.2 r-rfast@2.1.5.2 r-rcurl@1.98-1.17 r-rcolorbrewer@1.1-3 r-plotly@4.11.0 r-pbapply@1.7-4 r-htmlwidgets@1.6.4 r-gridextra@2.3 r-ggplot2@4.0.1 r-fastcluster@1.3.0 r-energy@1.7-12 r-dt@0.34.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-colourpicker@1.3.0 r-bsplus@0.1.5 r-biostrings@2.78.0 r-biodist@1.82.0 r-biocstyle@2.38.0 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/BIONF/PhyloProfile/
Licenses: Expat
Build system: r
Synopsis: PhyloProfile
Description:

PhyloProfile is a tool for exploring complex phylogenetic profiles. Phylogenetic profiles, presence/absence patterns of genes over a set of species, are commonly used to trace the functional and evolutionary history of genes across species and time. With PhyloProfile we can enrich regular phylogenetic profiles with further data like sequence/structure similarity, to make phylogenetic profiling more meaningful. Besides the interactive visualisation powered by R-Shiny, the package offers a set of further analysis features to gain insights like the gene age estimation or core gene identification.

r-pd-hg-u95a 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95A
Description:

Platform Design Info for The Manufacturer's Name HG_U95A.

r-pd-mirna-3-1 3.8.1
Propagated dependencies: r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.3.1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-3_1
Description:

Platform Design Info for Affymetrix miRNA-3_1.

r-pd-genomewidesnp-5 3.14.1
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.genomewidesnp.5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix GenomeWideSNP_5
Description:

Platform Design Info for Affymetrix GenomeWideSNP_5.

r-pd-rg-u34a 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rg.u34a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name RG_U34A
Description:

Platform Design Info for The Manufacturer's Name RG_U34A.

r-polytect 1.2.0
Propagated dependencies: r-tidyverse@2.0.0 r-sn@2.1.1 r-smoof@1.6.0.3 r-rgenoud@5.9-0.11 r-paramhelpers@1.14.2 r-mvtnorm@1.3-3 r-mlrmbo@1.1.5.1 r-lhs@1.2.0 r-ggplot2@4.0.1 r-flowpeaks@1.56.0 r-dplyr@1.1.4 r-dicekriging@1.6.1 r-cowplot@1.2.0 r-biocmanager@1.30.27
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/emmachenlingo/Polytect
Licenses: Artistic License 2.0
Build system: r
Synopsis: An R package for digital data clustering
Description:

Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.

r-plotgardener 1.16.0
Propagated dependencies: r-withr@3.0.2 r-strawr@0.0.92 r-rlang@1.1.6 r-rhdf5@2.54.0 r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-purrr@1.2.0 r-plyranges@1.30.1 r-iranges@2.44.0 r-glue@1.8.0 r-ggplotify@0.1.3 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-curl@7.0.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://phanstiellab.github.io/plotgardener
Licenses: Expat
Build system: r
Synopsis: Coordinate-Based Genomic Visualization Package for R
Description:

Coordinate-based genomic visualization package for R. It grants users the ability to programmatically produce complex, multi-paneled figures. Tailored for genomics, plotgardener allows users to visualize large complex genomic datasets and provides exquisite control over how plots are placed and arranged on a page.

r-pd-hugene-2-0-st 3.14.1
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hugene.2.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix HuGene-2_0-st
Description:

Platform Design Info for Affymetrix HuGene-2_0-st.

r-pd-hg-u219 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u219
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U219
Description:

Platform Design Info for The Manufacturer's Name HG-U219.

r-plotgrouper 1.28.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-shinythemes@1.2.0 r-shiny@1.11.1 r-scales@1.4.0 r-rlang@1.1.6 r-readxl@1.4.5 r-readr@2.1.6 r-magrittr@2.0.4 r-hmisc@5.2-4 r-gtable@0.3.6 r-gridextra@2.3 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-egg@0.4.5 r-dplyr@1.1.4 r-colourpicker@1.3.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://jdgagnon.github.io/plotGrouper/
Licenses: GPL 3
Build system: r
Synopsis: Shiny app GUI wrapper for ggplot with built-in statistical analysis
Description:

This package provides a shiny app-based GUI wrapper for ggplot with built-in statistical analysis. Import data from file and use dropdown menus and checkboxes to specify the plotting variables, graph type, and look of your plots. Once created, plots can be saved independently or stored in a report that can be saved as a pdf. If new data are added to the file, the report can be refreshed to include new data. Statistical tests can be selected and added to the graphs. Analysis of flow cytometry data is especially integrated with plotGrouper. Count data can be transformed to return the absolute number of cells in a sample (this feature requires inclusion of the number of beads per sample and information about any dilution performed).

r-pviz 1.44.0
Propagated dependencies: r-iranges@2.44.0 r-gviz@1.54.0 r-genomicranges@1.62.0 r-data-table@1.17.8 r-biovizbase@1.58.0 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/Pviz
Licenses: Artistic License 2.0
Build system: r
Synopsis: Peptide Annotation and Data Visualization using Gviz
Description:

Pviz adapts the Gviz package for protein sequences and data.

r-precisetad 1.20.0
Propagated dependencies: r-s4vectors@0.48.0 r-rcgh@1.40.0 r-randomforest@4.7-1.2 r-prroc@1.4 r-proc@1.19.0.1 r-pbapply@1.7-4 r-modelmetrics@1.2.2.2 r-iranges@2.44.0 r-gtools@3.9.5 r-genomicranges@1.62.0 r-foreach@1.5.2 r-e1071@1.7-16 r-dosnow@1.0.20 r-dbscan@1.2.3 r-cluster@2.1.8.1 r-caret@7.0-1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/dozmorovlab/preciseTAD
Licenses: Expat
Build system: r
Synopsis: preciseTAD: A machine learning framework for precise TAD boundary prediction
Description:

preciseTAD provides functions to predict the location of boundaries of topologically associated domains (TADs) and chromatin loops at base-level resolution. As an input, it takes BED-formatted genomic coordinates of domain boundaries detected from low-resolution Hi-C data, and coordinates of high-resolution genomic annotations from ENCODE or other consortia. preciseTAD employs several feature engineering strategies and resampling techniques to address class imbalance, and trains an optimized random forest model for predicting low-resolution domain boundaries. Translated on a base-level, preciseTAD predicts the probability for each base to be a boundary. Density-based clustering and scalable partitioning techniques are used to detect precise boundary regions and summit points. Compared with low-resolution boundaries, preciseTAD boundaries are highly enriched for CTCF, RAD21, SMC3, and ZNF143 signal and more conserved across cell lines. The pre-trained model can accurately predict boundaries in another cell line using CTCF, RAD21, SMC3, and ZNF143 annotation data for this cell line.

r-pd-mogene-1-0-st-v1 3.14.1
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mogene.1.0.st.v1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MoGene-1_0-st-v1
Description:

Platform Design Info for Affymetrix MoGene-1_0-st-v1.

r-pd-hg-u95c 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95c
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95C
Description:

Platform Design Info for The Manufacturer's Name HG_U95C.

r-proper 1.42.0
Propagated dependencies: r-edger@4.8.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PROPER
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: PROspective Power Evaluation for RNAseq
Description:

This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.

r-pd-hugene-1-1-st-v1 3.14.1
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hugene.1.1.st.v1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix HuGene-1_1-st-v1
Description:

Platform Design Info for Affymetrix HuGene-1_1-st-v1.

r-pd-hg-u133a-tag 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133a.tag
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133A_tag
Description:

Platform Design Info for The Manufacturer's Name HG-U133A_tag.

r-primeviewcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/primeviewcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: primeviewcdf
Description:

This package provides a package containing an environment representing the PrimeView.cdf file.

r-pogos 1.30.0
Propagated dependencies: r-shiny@1.11.1 r-s4vectors@0.48.0 r-rjson@0.2.23 r-ontoproc@2.4.0 r-httr@1.4.7 r-ggplot2@4.0.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pogos
Licenses: Artistic License 2.0
Build system: r
Synopsis: PharmacOGenomics Ontology Support
Description:

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

r-pd-hta-2-0 3.12.2
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hta.2.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix HTA-2_0
Description:

Platform Design Info for Affymetrix HTA-2_0.

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Total results: 68655