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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-fdb-fantom4-promoters-hg19 1.0.0
Propagated dependencies: r-genomicfeatures@1.62.0 r-biostrings@2.78.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19
Licenses: Artistic License 2.0
Build system: r
Synopsis: Annotation package for FANTOM4 promoters identified from THP-1 cells
Description:

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified.

r-fly-db0 3.22.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/fly.db0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Base Level Annotation databases for fly
Description:

Base annotation databases for fly, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

r-flowbeads 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowBeads
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowBeads: Analysis of flow bead data
Description:

This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.

r-fourdndata 1.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-hicexperiment@1.10.0 r-genomicranges@1.62.0 r-biocfilecache@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/js2264/fourDNData
Licenses: Expat
Build system: r
Synopsis: 4DN data package
Description:

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

r-flowbin 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowBin
Licenses: Artistic License 2.0
Build system: r
Synopsis: Combining multitube flow cytometry data by binning
Description:

Software to combine flow cytometry data that has been multiplexed into multiple tubes with common markers between them, by establishing common bins across tubes in terms of the common markers, then determining expression within each tube for each bin in terms of the tube-specific markers.

r-fusesom 1.12.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-s4vectors@0.48.0 r-rcpp@1.1.0 r-psych@2.5.6 r-proxy@0.4-27 r-pheatmap@1.0.13 r-ggpubr@0.6.2 r-ggplotify@0.1.3 r-ggplot2@4.0.1 r-fpc@2.2-13 r-fcps@1.3.5 r-fastcluster@1.3.0 r-diptest@0.77-2 r-coop@0.6-3 r-cluster@2.1.8.1 r-analogue@0.18.1
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FuseSOM
Licenses: GPL 2
Build system: r
Synopsis: Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets
Description:

This package provides a correlation-based multiview self-organizing map for the characterization of cell types in highly multiplexed in situ imaging cytometry assays (`FuseSOM`) is a tool for unsupervised clustering. `FuseSOM` is robust and achieves high accuracy by combining a `Self Organizing Map` architecture and a `Multiview` integration of correlation based metrics. This allows FuseSOM to cluster highly multiplexed in situ imaging cytometry assays.

r-frgepistasis 1.46.0
Propagated dependencies: r-mass@7.3-65 r-fda@6.3.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FRGEpistasis
Licenses: GPL 2
Build system: r
Synopsis: Epistasis Analysis for Quantitative Traits by Functional Regression Model
Description:

This package provides a Tool for Epistasis Analysis Based on Functional Regression Model.

r-flowpeaks 1.56.0
Dependencies: gsl@2.8
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPeaks
Licenses: FSDG-compatible
Build system: r
Synopsis: An R package for flow data clustering
Description:

This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

r-filterffpe 1.20.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FilterFFPE
Licenses: LGPL 3
Build system: r
Synopsis: FFPE Artificial Chimeric Read Filter for NGS data
Description:

This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) tissues. These artificial chimeric reads can lead to a large number of false positive structural variation (SV) calls. The required input is an indexed BAM file of a FFPE sample.

r-fastreer 2.0.0
Dependencies: openjdk@25
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/gkanogiannis/fastreeR
Licenses: GPL 3
Build system: r
Synopsis: Phylogenetic, Distance and Other Calculations on VCF and Fasta Files
Description:

Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java-11 and called via rJava. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.

r-flowclean 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowClean
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowClean
Description:

This package provides a quality control tool for flow cytometry data based on compositional data analysis.

r-factdesign 1.86.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/factDesign
Licenses: LGPL 2.0+
Build system: r
Synopsis: Factorial designed microarray experiment analysis
Description:

This package provides a set of tools for analyzing data from a factorial designed microarray experiment, or any microarray experiment for which a linear model is appropriate. The functions can be used to evaluate tests of contrast of biological interest and perform single outlier detection.

r-flowmatch 1.46.0
Propagated dependencies: r-rcpp@1.1.0 r-flowcore@2.22.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowMatch
Licenses: Artistic License 2.0
Build system: r
Synopsis: Matching and meta-clustering in flow cytometry
Description:

Matching cell populations and building meta-clusters and templates from a collection of FC samples.

r-faers 1.6.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/faers
Licenses: Expat
Build system: r
Synopsis: R interface for FDA Adverse Event Reporting System
Description:

The FDA Adverse Event Reporting System (FAERS) is a database used for the spontaneous reporting of adverse events and medication errors related to human drugs and therapeutic biological products. faers pacakge serves as the interface between the FAERS database and R. Furthermore, faers pacakge offers a standardized approach for performing pharmacovigilance analysis.

r-flowgate 1.10.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowGate
Licenses: Expat
Build system: r
Synopsis: Interactive Cytometry Gating in R
Description:

flowGate adds an interactive Shiny app to allow manual GUI-based gating of flow cytometry data in R. Using flowGate, you can draw 1D and 2D span/rectangle gates, quadrant gates, and polygon gates on flow cytometry data by interactively drawing the gates on a plot of your data, rather than by specifying gate coordinates. This package is especially geared toward wet-lab cytometerists looking to take advantage of R for cytometry analysis, without necessarily having a lot of R experience.

r-fdb-infiniummethylation-hg18 2.2.0
Propagated dependencies: r-txdb-hsapiens-ucsc-hg18-knowngene@3.2.2 r-org-hs-eg-db@3.22.0 r-genomicfeatures@1.62.0 r-biostrings@2.78.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FDb.InfiniumMethylation.hg18
Licenses: Artistic License 2.0
Build system: r
Synopsis: Annotation package for Illumina Infinium DNA methylation probes
Description:

Compiled HumanMethylation27 and HumanMethylation450 annotations.

r-fdb-ucsc-trnas 1.0.1
Propagated dependencies: r-genomicfeatures@1.62.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FDb.UCSC.tRNAs
Licenses: Artistic License 2.0
Build system: r
Synopsis: Annotation package for FeatureDb object(s)
Description:

Exposes an annotation databases generated from UCSC by exposing these as FeatureDb objects.

r-flowploidydata 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPloidyData
Licenses: GPL 3
Build system: r
Synopsis: Example Flow Cytometry Data
Description:

This package provides a collection of raw flow cytometry data for use in vignettes for the flowPloidy package.

r-flowtrans 1.62.0
Propagated dependencies: r-flowviz@1.74.0 r-flowcore@2.22.0 r-flowclust@3.48.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowTrans
Licenses: Artistic License 2.0
Build system: r
Synopsis: Parameter Optimization for Flow Cytometry Data Transformation
Description:

Profile maximum likelihood estimation of parameters for flow cytometry data transformations.

r-flowploidy 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/plantarum/flowPloidy
Licenses: GPL 3
Build system: r
Synopsis: Analyze flow cytometer data to determine sample ploidy
Description:

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

r-flowdensity 1.44.0
Dependencies: libxml2@2.14.6
Propagated dependencies: r-polyclip@1.10-7 r-gplots@3.2.0 r-flowviz@1.74.0 r-flowcore@2.22.0 r-car@3.1-3
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowDensity
Licenses: Artistic License 2.0
Build system: r
Synopsis: Sequential Flow Cytometry Data Gating
Description:

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

r-flowsorted-dlpfc-450k 1.46.0
Propagated dependencies: r-minfi@1.56.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FlowSorted.DLPFC.450k
Licenses: Artistic License 2.0
Build system: r
Synopsis: Illumina HumanMethylation data on sorted frontal cortex cell populations
Description:

Raw data objects for the Illumina 450k DNA methylation microarrays.

r-flowspecs 1.24.0
Propagated dependencies: r-zoo@1.8-14 r-reshape2@1.4.5 r-ggplot2@4.0.1 r-flowcore@2.22.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowSpecs
Licenses: Expat
Build system: r
Synopsis: Tools for processing of high-dimensional cytometry data
Description:

This package is intended to fill the role of conventional cytometry pre-processing software, for spectral decomposition, transformation, visualization and cleanup, and to aid further downstream analyses, such as with DepecheR, by enabling transformation of flowFrames and flowSets to dataframes. Functions for flowCore-compliant automatic 1D-gating/filtering are in the pipe line. The package name has been chosen both as it will deal with spectral cytometry and as it will hopefully give the user a nice pair of spectacles through which to view their data.

r-fletcher2013a 1.46.0
Propagated dependencies: r-venndiagram@1.7.3 r-limma@3.66.0 r-gplots@3.2.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: http://dx.doi.org/10.1038/ncomms3464
Licenses: GPL 2+
Build system: r
Synopsis: Gene expression data from breast cancer cells under FGFR2 signalling perturbation
Description:

The package Fletcher2013a contains time-course gene expression data from MCF-7 cells treated under different experimental systems in order to perturb FGFR2 signalling. The data comes from Fletcher et al. (Nature Comms 4:2464, 2013) where further details about the background and the experimental design of the study can be found.

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Total results: 69112