The package allows users to readily import spatial data obtained from the 10X Xenium Analyzer pipeline. Supported formats include parquet', h5', and mtx files. The package mainly represents data as SpatialExperiment objects.

Multi-level model for cross-study detection of differential gene expression.

This package provides a package containing an environment representing the X_laevis_2.CDF file.

This package provides a package containing an environment representing the X_tropicalis.cdf file.

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

The Xeva package provides efficient and powerful functions for patient-drived xenograft (PDX) based pharmacogenomic data analysis. This package contains a set of functions to perform analysis of patient-derived xenograft data. This package was developed by the BHKLab, for further information please see our documentation.

This package provides a collection of so-called gold (and other) standard data sets.

This package provides a package containing an environment representing the Ye6100subC.CDF file.

This package provides a collection of different sets of experimental data from yeast.

Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2) assembled using data from public repositories.

ExpressionSet for Spellman et al. (1998) yeast cell cycle microarray experiment.

This package provides a package containing an environment representing the Ye6100subB.CDF file.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Yeast\_2\_probe\_tab.

Base annotation databases for yeast, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

This package provides a package containing an environment representing the Ye6100subA.CDF file.

The yeast genome data was retrieved from the sequence read archive, aligned with bwa, and converted to BAM format with samtools.

This package provides a package containing an environment representing the Ye6100subD.CDF file.

This package provides a selection of RNA-Seq data from a yeast transcriptome experiment.

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

This package provides a package containing an environment representing the Yeast_2.cdf file.

This package provides a package containing an environment representing the YG_S98.cdf file.

Affymetrix Affymetrix YG_S98 Array annotation data (chip ygs98) assembled using data from public repositories.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was YG-S98\_probe\_tab.

Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. This package implements the camera method from the limma package proposed by Wu and Smyth (2012). Zenith is a simple extension of camera to be compatible with linear mixed models implemented in variancePartition::dream().