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Lightweight wrappers around R CMD INSTALL', R CMD check', R CMD build', win-builder uploads, and CRAN submission. Provides functions for installing, loading, checking, building, and submitting R packages with minimal dependencies (only curl for uploads). Background on R package development is in Wickham and Bryan (2023, ISBN:9781098134945), "Writing R Extensions" <https://cran.r-project.org/doc/manuals/R-exts.html>, and the CRAN Repository Policy <https://cran.r-project.org/web/packages/policies.html>.
Fit Thurstonian Item Response Theory (IRT) models in R. This package supports fitting Thurstonian IRT models and its extensions using Stan', lavaan', or Mplus for the model estimation. Functionality for extracting results, making predictions, and simulating data is provided as well. References: Brown & Maydeu-Olivares (2011) <doi:10.1177/0013164410375112>; Bürkner et al. (2019) <doi:10.1177/0013164419832063>.
Species trait data from many sources, including sequence data from NCBI (<https://www.ncbi.nlm.nih.gov/>), plant traits from BETYdb, and data from EOL Traitbank and BirdLife International.
Standalone R implementation of habitat connectivity corridor optimization for raster and vector workflows. Supports scenario-based planning with budget-constrained optimization, optional impassable areas, packaged parity fixtures, and comparative before-and-after connectivity metrics. The package exposes structural, movement-oriented, and species-oriented strategies in a reproducible workflow aligned with a companion GIS plugin while avoiding a desktop GIS dependency.
Computes treatment patterns within a given cohort using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM). As described in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.
Converting text to numerical features requires specifically created procedures, which are implemented as steps according to the recipes package. These steps allows for tokenization, filtering, counting (tf and tfidf) and feature hashing.
Approximations of global p-values when testing hypothesis in presence of non-identifiable nuisance parameters. The method relies on the Euler characteristic heuristic and the expected Euler characteristic is efficiently computed by in Algeri and van Dyk (2018) <arXiv:1803.03858>.
This package provides a testing method for inferring microbial networks. It differs from existing microbial network analyses in that it provides calibrated results by controlling the false discovery rate. The method accounts for the complex features of taxa count data. It also accommodates both independent and clustered samples, offers separate linear and nonlinear tests for each pair of taxa, and includes an omnibus test that bypasses the need to specify the type of relationship for each pair of taxa.
This package performs multiple comparison analyses using Tukey's Honestly Significant Difference (HSD) test, with intuitive letter grouping of means for balanced and unbalanced designs. Accepts input from formula', aov', lm', aovlist', and lmerMod objects, including straightforward handling of interactions. For more details see Tukey (1949) <doi:10.2307/3001913>.
This package provides users a quick exploratory dive into common visualizations without writing a single line of code given the users data follows the Analysis Data Model (ADaM) standards put forth by the Clinical Data Interchange Standards Consortium (CDISC) <https://www.cdisc.org>. Prominent modules/ features of the application are the Table Generator, Population Explorer, and the Individual Explorer. The Table Generator allows users to drag and drop variables and desired statistics (frequencies, means, ANOVA, t-test, and other summary statistics) into bins that automagically create stunning tables with validated information. The Population Explorer offers various plots to visualize general trends in the population from various vantage points. Plot modules currently include scatter plot, spaghetti plot, box plot, histogram, means plot, and bar plot. Each plot type allows the user to plot uploaded variables against one another, and dissect the population by filtering out certain subjects. Last, the Individual Explorer establishes a cohesive patient narrative, allowing the user to interact with patient metrics (params) by visit or plotting important patient events on a timeline. All modules allow for concise filtering & downloading bulk outputs into html or pdf formats to save for later.
Temperature measurement data, equations and methods for thermocouples, wire RTD, thermistors, IC thermometers, bimetallic strips and the ITS-90.
Routines for nonlinear time series analysis based on Threshold Autoregressive Moving Average (TARMA) models. It provides functions and methods for: TARMA model fitting and forecasting, including robust estimators, see Goracci et al. JBES (2025) <doi:10.1080/07350015.2024.2412011>; tests for threshold effects, see Giannerini et al. JoE (2024) <doi:10.1016/j.jeconom.2023.01.004>, Goracci et al. Statistica Sinica (2023) <doi:10.5705/ss.202021.0120>, Angelini et al. (2024) OBES <doi:10.1111/obes.12647>; unit-root tests based on TARMA models, see Chan et al. Statistica Sinica (2024) <doi:10.5705/ss.202022.0125>.
Download TIGER/Line shapefiles from the United States Census Bureau (<https://www.census.gov/geographies/mapping-files/time-series/geo/tiger-line-file.html>) and load into R as sf objects.
Helps the R users to get data from Tushare Pro'<https://tushare.pro>. Tushare Pro is a platform as well as a community with a lot of staffs working in financial area. We support financial data such as stock price, financial report statements and digital coins data.
This package provides infrastructure for handling running, cycling and swimming data from GPS-enabled tracking devices within R. The package provides methods to extract, clean and organise workout and competition data into session-based and unit-aware data objects of class trackeRdata (S3 class). The information can then be visualised, summarised, and analysed through flexible and extensible methods. Frick and Kosmidis (2017) <doi: 10.18637/jss.v082.i07>, which is updated and maintained as one of the vignettes, provides detailed descriptions of the package and its methods, and real-data demonstrations of the package functionality.
Obtain population density and body size structure, using video material or image sequences as input. Functions assist in the creation of image sequences from videos, background detection and subtraction, particle identification and tracking. An artificial neural network can be trained for noise filtering. The goal is to supply accurate estimates of population size, structure and/or individual behavior, for use in evolutionary and ecological studies.
Tidal analysis of evenly spaced observed time series (time step 1 to 60 min) with or without shorter gaps using the harmonic representation of inequalities. The analysis should preferably cover an observation period of at least 19 years. For shorter periods low frequency constituents are not taken into account, in accordance with the Rayleigh-Criterion. The main objective of this package is to synthesize or predict a tidal time series.
This package provides functions for propensity score estimation and weighting for continuous exposures as described in Zhu, Y., Coffman, D. L., & Ghosh, D. (2015). A boosting algorithm for estimating generalized propensity scores with continuous treatments. Journal of Causal Inference, 3(1), 25-40. <doi:10.1515/jci-2014-0022>.
Just how spdl provides a nice and consistent interface to spdlog (via RcppSpdlog'), this package does so for spdlite', the lightweight header-only C++-20 logging library that provides a lighter version of spdlog'. This package is essentially a thin shim around it for a more compact interface from both R and C++.
This package provides wrapper functions to the multiple marginal model function mmm() of package multcomp to implement the trend test of Tukey, Ciminera and Heyse (1985) <DOI:10.2307/2530666> for general parametric models.
With the objective of including data from RSS feeds into your analysis, tidyRSS parses RSS, Atom and JSON feeds and returns a tidy data frame.
This package provides a convenient R interface to the National Health Service NHS Technology Reference Update Distribution (TRUD) API', allowing users to list available releases for their subscribed items, retrieve metadata, and download release files. For more information on the API, see <https://isd.digital.nhs.uk/trud/users/guest/filters/0/api>.
Implementation of Time to Target plot based on the work of Ribeiro and Rosseti (2015) <DOI:10.1007/s11590-014-0760-8>, that describe a numerical method that gives the probability of an algorithm A finds a solution at least as good as a given target value in smaller computation time than algorithm B.
Implementation of Testlet and Item Response Theory. A light-version yet comprehensive and streamlined framework for psychometric analysis using unidimensional and multidimensional Item Response Theory (IRT; Baker & Kim (2004) <doi:10.1201/9781482276725>) and Testlet Response Theory (TRT; Wainer et al., (2007) <doi:10.1017/CBO9780511618765>). Designed for researchers, this package supports the estimation of item and person parameters for a wide variety of models, including binary (i.e., Rasch, 2-Parameter Logistic, 3-Parameter Logistic) and polytomous (Partial Credit Model, Generalized Partial Credit Model, Graded Response Model) formats. It also supports the estimation of Testlet models (Rasch Testlet, 2-Parameter Logistic Testlet, 3-Parameter Logistic Testlet, Bifactor, Partial Credit Model Testlet, Graded Response), allowing users to account for local item dependence in bundled items. A key feature is the specialized support for combination use and joint estimation of item response model and testlet response model in one calibration. Beyond standard estimation via Marginal Maximum Likelihood with Expectation-Maximization (EM) or Joint Maximum Likelihood, the package also offers Bayesian estimation using priors with maximum a posteriori (MAP) method for unidimensional item response theory models. It also provides functions for scale linking and equating (Mean-Mean, Mean-Sigma, Stocking-Lord) to ensure comparability across mixed-format test forms. It also facilitates fixed-parameter calibration, enabling users to estimate person abilities with known item parameters or vice versa, which is essential for pre-equating studies and item bank maintenance. Comprehensive data simulation functions are included to generate synthetic datasets with complex structures, including mixed-model blocks and specific testlet effects, aiding in methodological research and study design validation. Researchers can try multiple simulation situations.