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This package provides empirical likelihood-based methods for the inference of variance components in linear mixed-effects models.
The confusion matrix (CM) is used to get a classifier's evaluation measure in order to select a method among many. A stochastic matrix and its transformation are computed from the CM. The eigenvalues of the transformed symmetric matrix are used to get an entropy which appears to be a good evaluation measure. Many other measures, commonly used, are provided for comparison purpose.
This package provides Some of the most important evaluation measures for evaluating a model. Just by giving the real and predicted class, measures such as accuracy, sensitivity, specificity, ppv, npv, fmeasure, mcc and ... will be returned.
An alternative to Exploratory Factor Analysis (EFA) for metrical data in R. Drawing on characteristics of classical test theory, Exploratory Likert Scaling (ELiS) supports the user exploring multiple one-dimensional data structures. In common research practice, however, EFA remains the go-to method to uncover the (underlying) structure of a data set. Orthogonal dimensions and the potential of overextraction are often accepted as side effects. As described in Müller-Schneider (2001) <doi:10.1515/zfsoz-2001-0404>), ELiS confronts these problems. As a result, elisr provides the platform to fully exploit the exploratory potential of the multiple scaling approach itself.
This package creates simple or stacked epidemic curves for hourly, daily, weekly or monthly outcome data.
Fast and easy computation of Euclidean Minimum Spanning Trees (EMST) from data, relying on the R API for mlpack - the C++ Machine Learning Library (Curtin et. al., 2013). emstreeR uses the Dual-Tree Boruvka (March, Ram, Gray, 2010, <doi:10.1145/1835804.1835882>), which is theoretically and empirically the fastest algorithm for computing an EMST. This package also provides functions and an S3 method for readily visualizing Minimum Spanning Trees (MST) using either the style of the base', scatterplot3d', or ggplot2 libraries; and functions to export the MST output to shapefiles.
This package provides tools for extreme value modeling based on the r-largest order statistics framework. The package provides functions for parameter estimation via maximum likelihood, return level estimation with standard errors, profile likelihood-based confidence intervals, random sample generation, and entropy difference tests for selecting the number of order statistics r. Several r-largest order statistics models are implemented, including the four-parameter kappa (rK4D), generalized logistic (rGLO), generalized Gumbel (rGGD), logistic (rLD), and Gumbel (rGD) distributions. The rK4D methodology is described in Shin et al. (2022) <doi:10.1016/j.wace.2022.100533>, the rGLO model in Shin and Park (2024) <doi:10.1007/s00477-023-02642-7>, and the rGGD model in Shin and Park (2025) <doi:10.1038/s41598-024-83273-y>. The underlying distributions are related to the kappa distribution of Hosking (1994) <doi:10.1017/CBO9780511529443>, the generalized logistic distribution discussed by Ahmad et al. (1988) <doi:10.1016/0022-1694(88)90015-7>, and the generalized Gumbel distribution of Jeong et al. (2014) <doi:10.1007/s00477-014-0865-8>. Penalized likelihood approaches for extreme value estimation follow Martins and Stedinger (2000) <doi:10.1029/1999WR900330> and Coles and Dixon (1999) <doi:10.1023/A:1009905222644>. Selection of r is supported using methods discussed in Bader et al. (2017) <doi:10.1007/s11222-016-9697-3>. The package is intended for hydrological, climatological, and environmental extreme value analysis.
This package provides tools for analysing lagged relationships between environmental variables and ecological or epidemiological time series. The package implements a workflow to aggregate meteorological data over multiple lagged intervals, fit regression models, including mixed-effect models using glmmTMB', for each lag window, and visualise varied models outcomes (effect strength and direction, model prediction error...) using cross-correlation maps ('CCM').
Obtain Bayesian posterior distributions of dominance hierarchy steepness (Neumann and Fischer (2023) <doi:10.1111/2041-210X.14021>). Steepness estimation is based on Bayesian implementations of either Elo-rating or David's scores.
It allows running EViews (<https://eviews.com>) program from R, R Markdown and Quarto documents. EViews (Econometric Views) is a statistical software for Econometric analysis. This package integrates EViews and R and also serves as an EViews Knit-Engine for knitr package. Write all your EViews commands in R, R Markdown or Quarto documents. For details, please consult our peer-review article Mati S., Civcir I. and Abba S.I (2023) <doi:10.32614/RJ-2023-045>.
Fit and sample from the ensemble model described in Spence et al (2018): "A general framework for combining ecosystem models"<doi:10.1111/faf.12310>.
Evaluation Platform in Chronic Obstructive Pulmonary Disease (EPIC) is a Discrete Event Simulation (DES) model that simulates health outcomes of patients with Chronic Obstructive Pulmonary Disease (COPD) based on demographics and individual-level risk factors, based on the model published in Sadatsafavi et al. (2019) <doi:10.1177/0272989X18824098>.
This package provides wrap functions to export and import graphics and data frames in R to microsoft office. And This package also provide write out figures with lots of different formats. Since people may work on the platform without GUI support, the package also provide function to easily write out figures to lots of different type of formats. Now this package provide function to extract colors from all types of figures and pdf files.
This package provides a data transformation method which takes into account the special property of scale non-invariance with a breakpoint at 1 of the Euclidean distance.
This package provides a tool to run Monte Carlo simulation of catastrophe model event loss tables, using a Poisson frequency and Beta severity distribution.
This package provides a Shiny web application for energy industry analytics. Take an overview of the industry, measure Key Performance Indicators, identify changes in the industry over time, and discover new relationships in the data.
This package provides basic distribution functions for a mixture model of a Gaussian and exponential distribution.
This package provides functions and data sets to perform and demonstrate community ecology statistical tests, including Hutcheson's t-test (Hutcheson (1970) <doi:10.1016/0022-5193(70)90124-4>, Zar (2010) ISBN:9780321656865).
Three semi-parametric methods for detection of outliers in environmental data based on kernel regression and subsequent analysis of smoothing residuals. The first method (Campulova, Michalek, Mikuska and Bokal (2018) <DOI: 10.1002/cem.2997>) analyzes the residuals using changepoint analysis, the second method is based on control charts (Campulova, Veselik and Michalek (2017) <DOI: 10.1016/j.apr.2017.01.004>) and the third method (Holesovsky, Campulova and Michalek (2018) <DOI: 10.1016/j.apr.2017.06.005>) analyzes the residuals using extreme value theory (Holesovsky, Campulova and Michalek (2018) <DOI: 10.1016/j.apr.2017.06.005>).
This package provides an interface to the European Central Bank's Data Portal API, allowing for programmatic retrieval of a vast quantity of statistical data.
Estimation for high conditional quantiles based on quantile regression.
Perform analysis of variance and other important complementary analyses. The functions are easy to use. Performs analysis in various designs, with balanced and unbalanced data.
Estimating individual-level covariate-outcome associations using aggregate data ("ecological inference") or a combination of aggregate and individual-level data ("hierarchical related regression").
An assistant built on large language models that helps interpret statistical model outputs in R by generating concise, audience-specific explanations.