This package orders panels in scatterplot matrices and parallel coordinate displays by some merit index. It contains various indices of merit, ordering functions, and enhanced versions of pairs and parcoord which color panels according to their merit level.

This package provides a collection of tests, data sets, and examples for diagnostic checking in linear regression models. Furthermore, some generic tools for inference in parametric models are provided.

This package supports the analysis of count data exhibiting autoregressive properties, using the Autoregressive Conditional Poisson model (ACP(p,q)) proposed by Heinen (2003).

This package provides an interface to use SPARQL to pose SELECT or UPDATE queries to an end-point.

This package provides convenience functions for advanced linear algebra with tensors and computation with datasets of tensors on a higher level abstraction. It includes Einstein and Riemann summing conventions, dragging, co- and contravariate indices, and parallel computations on sequences of tensors.

This package provides code analysis tools for R to check R code for possible problems.

This package provides a complete analysis pipeline for matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) and other two-dimensional mass spectrometry data. In addition to commonly used plotting and processing methods it includes distinctive features, namely baseline subtraction methods such as morphological filters (TopHat) or the statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.

This is a deprecated package for calculating pairwise multiple comparisons of mean rank sums. This package is superseded by the novel PMCMRplus package. The PMCMR package is no longer maintained, but kept for compatibility of dependent packages for some time.

This package provides an implementation of sparse linear discriminant analysis, which is a supervised classification method for multiple classes. Various novel optimization approaches to this problem are implemented including alternating direction method of multipliers (ADMM), proximal gradient (PG) and accelerated proximal gradient (APG). Functions for performing cross validation are also supplied along with basic prediction and plotting functions. Sparse zero variance discriminant (SZVD) analysis is also included in the package.

Circular layout is an efficient way to visualise huge amounts of information. This package provides an implementation of circular layout generation in R as well as an enhancement of available software. Its flexibility is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, it gives users more convenience and freedom to design figures for better understanding complex patterns behind multi-dimensional data.

This package provides a drop-in replacement for rasterize from the raster package that takes sf-type objects, and is much faster. There is support for the main options provided by the rasterize function, including setting the field used and background value, and options for aggregating multi-layer rasters.

This package provides Map, Reduce and Filter variants to generate jobs on batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine. Multicore and SSH systems are also supported.

This package provides themes for use with Shiny. It includes several Bootstrap themes, which are packaged for use with Shiny applications.

This package extends the functionality of ggplot2, providing the capability to plot ternary diagrams for (a subset of) the ggplot2 geometries. Additionally, ggtern has implemented several new geometries which are unavailable to the standard ggplot2 release.

This package provides a set of utilities for client/server computing with R, controlling a remote R session (the server) from a local one (the client).

This package provides portable tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes and their children; restart processes. It can read the standard output and error of the processes, using non-blocking connections. processx can poll a process for standard output or error, with a timeout. It can also poll several processes at once.

This package implements the Figueiredo machine learning algorithm for adaptive sparsity and the Wong algorithm for adaptively sparse Gaussian geometric models.

This package provides a complete GCC cross toolchain for C/C++ development to be installed in user profiles. This includes GCC, as well as libc (headers and binariesl), and Binutils. GCC is the GNU Compiler Collection.

This package provides a complete GCC cross toolchain for C/C++ development to be installed in user profiles. This includes GCC, as well as libc (headers and binariesl), and Binutils. GCC is the GNU Compiler Collection.

This package provides a complete GCC cross toolchain for C/C++ development to be installed in user profiles. This includes GCC, as well as libc (headers and binariesl), and Binutils. GCC is the GNU Compiler Collection.

This package provides a complete GCC cross toolchain for C/C++ development to be installed in user profiles. This includes GCC, as well as libc (headers and binariesl), and Binutils. GCC is the GNU Compiler Collection.

This package provides a complete GCC cross toolchain for C/C++ development to be installed in user profiles. This includes GCC, as well as libc (headers and binariesl), and Binutils. GCC is the GNU Compiler Collection.

libb2 is a portable implementation of the BLAKE2 family of cryptographic hash functions. It includes optimised implementations for IA-32 and AMD64 processors, and an interface layer that automatically selects the best implementation for the processor it is run on.

BLAKE2 (RFC 7693) is a family of high-speed cryptographic hash functions that are faster than MD5, SHA-1, SHA-2, and SHA-3, yet are at least as secure as the latest standard, SHA-3. It is an improved version of the SHA-3 finalist BLAKE.

Enchive is a tool to encrypt files to yourself for long-term archival. It's a focused, simple alternative to more complex solutions such as GnuPG or encrypted filesystems. Enchive has no external dependencies and is trivial to build for local use. Portability is emphasized over performance.