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SuperCollider implementation of the Dirt sampler, originally designed for the TidalCycles environment. SuperDirt is a general purpose framework for playing samples and synths, controllable over the Open Sound Control protocol, and locally from the SuperCollider language.
Tidal is a domain specific language for live coding patterns.
Convert Float and Decimal values to/from raw octets.
Ableton Link integration for Tidal, to let Tidal sync with external clocks
GNU Hello prints the message "Hello, world!" and then exits. It serves as an example of standard GNU coding practices. As such, it supports command-line arguments, multiple languages, and so on.
Ancestral recombination graph sampling method.
SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data.
SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data.
phase genomic variants using DNA sequencing reads.
Set of tools for handling XCF files
Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)
IMPUTE 5 is a genotype imputation method that can scale to reference panels with millions of samples. This method continues to refine the observation made in the IMPUTE2 method, that accuracy is optimized via use of a custom subset of haplotypes when imputing each individual. It achieves fast, accurate, and memory-efficient imputation by selecting haplotypes using the Positional Burrows Wheeler Transform (PBWT). By using the PBWT data structure at genotyped markers, IMPUTE 5 identifies locally best matching haplotypes and long identical by state segments. The method then uses the selected haplotypes as conditioning states within the IMPUTE model.
POLEGON stands for Prior-Oblivious Length Estimation in Genealogies with Oriented Network. POLEGON works with inferred Ancestral Recombination Graph (ARG) to re-calibrate the branch length, without the usage of any prior.
Utilities for converting tree sequences to and from other formats
Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.
Spatial inference from ancestral recombination graphs
Utilities for comparing tree sequences
This package provides a tool to infer node locations and states from tree sequences.
Topology weighting from unphased genotypes of any ploidy.
Compression utilities for tree sequences.
Efficient complex trait analyses from ARG.
Webapp to view and visualise the information structure in tskit ARGs
Linear mixed models from ancestral recombination graphs.