Library within FSL for creating and analyzing shape models of brain structures, aiding in morphometric studies and neuroimaging research.

Collection of miscellaneous C functions and utilities within FSL, providing various helper functions for neuroimaging analysis.

FLIRT (FMRIB's Linear Image Registration Tool) is a fully automated robust and accurate tool for linear (affine) intra- and inter-modal brain image registration.

FAST4 is an automated segmentation tool in FSL that segments brain images into different tissue types and corrects for bias field inhomogeneities.

The meshclass module in FSL provides the Mesh class for representing and manipulating 3D models made of triangles, supporting various geometric operations and querie

A library that returns the object representing an image/volume once it has been deserialized by the newnifti library. The library implements a data container and common operations for nifti images/volumes

Topup is a tool within FSL that corrects for susceptibility-induced distortions in echo planar imaging (EPI) data.

FSL is a comprehensive library of analysis tools for FMRI, MRI and diffusion brain imaging data.

This meta-package provides all the FSL modules.

Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.

Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.

Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.

Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.

Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.

Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.

The Gurobi Optimizer is a commercial optimization solver for linear programming (LP), quadratic programming (QP), quadratically constrained programming (QCP), mixed integer linear programming (MILP), mixed-integer quadratic programming (MIQP), and mixed-integer quadratically constrained programming (MIQCP). See here for more info: https://www.gurobi.com/documentation/9.0/quickstart_linux/cs_python.html.

OpenFabrics Interfaces (OFI) is a framework focused on exporting fabric communication services to applications. OFI is best described as a collection of libraries and applications used to export fabric services. The key components of OFI are: application interfaces, provider libraries, kernel services, daemons, and test applications.

Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.

This package is low-level user-level Intel's communications interface. The PSM2 API is a high-performance vendor-specific protocol that provides a low-level communications interface for the Intel Omni-Path family of high-speed networking devices.

This package provides headers of the HFI1 Linux driver.

Gloo is a collective communications library. It comes with a number of collective algorithms useful for machine learning applications. These include a barrier, broadcast, and allreduce.

PyTorch is a Python package that provides two high-level features:

• tensor computation (like NumPy) with strong GPU acceleration;

• deep neural networks (DNNs) built on a tape-based autograd system.

You can reuse Python packages such as NumPy, SciPy, and Cython to extend PyTorch when needed.

Note: currently this package does not provide GPU support.

JAX is Autograd and XLA, brought together for high-performance numerical computing, including large-scale machine learning research. With its updated version of Autograd, JAX can automatically differentiate native Python and NumPy functions. It can differentiate through loops, branches, recursion, and closures, and it can take derivatives of derivatives of derivatives. It supports reverse-mode differentiation (a.k.a. backpropagation) via grad as well as forward-mode differentiation, and the two can be composed arbitrarily to any order.

Tensorboard is a visualization toolkit for TensorFlow, designed to provide metrics tracking, model visualization, and performance analysis. It allows users to generate interactive dashboards for monitoring training progress, visualizing computational graphs, and analyzing data distributions.

The Tensorboard Data Server is the backend component of TensorBoard that efficiently processes and serves log data. It improves TensorBoard's performance by handling large-scale event files asynchronously, enabling faster data loading and reduced memory usage.

TensorFlow is a flexible platform for building and training machine learning models. It provides a library for high performance numerical computation and includes high level Python APIs, including both a sequential API for beginners that allows users to build models quickly by plugging together building blocks and a subclassing API with an imperative style for advanced research.