Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.
API method:
GET /api/packages?search=hello&page=1&limit=20
where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned
in response headers.
If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.
modbedtools is a python command line tool to generate modbed files for visualization on the WashU Epigenome Browser.
This package provides string parsing functionalities for generating plotnames, filenames and paths.
Smithlab CPP is a C++ library that includes functions used in many of the Smith lab bioinformatics projects, such as a wrapper around Samtools data structures, classes for genomic regions, mapped sequencing reads, etc.
muon is a multimodal omics Python framework.
genomepy is designed to provide a simple and straightforward way to download and use genomic data. This includes
searching available data,
showing the available metadata,
automatically downloading, preprocessing and matching data, and
generating optional aligner indexes.
All with sensible, yet controllable defaults.
Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publications.
The IDR (Irreproducible Discovery Rate) framework is a unified approach to measure the reproducibility of findings identified from replicate experiments and provide highly stable thresholds based on reproducibility.
This package aims to simplify working with genomic region / interval data by providing a common interface that lets you access a wide selection of file types and formats for handling genomic region data---all using the same syntax.
Pyani provides a package and script for calculation of genome-scale average nucleotide identity.
eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences. Example applications include transcript-level RNA-Seq quantification, allele-specific/haplotype expression analysis (from RNA-Seq), transcription factor binding quantification in ChIP-Seq, and analysis of metagenomic data.
PyLiftover is a library for quick and easy conversion of genomic (point) coordinates between different assemblies.
hdWGCNA is an R package for performing weighted gene co-expression network analysis in high dimensional -omics such as single-cell RNA-seq or spatial transcriptomics.
GNU Bison is a general-purpose parser generator. It can build a deterministic or generalized LR parser from an annotated, context-free grammar. It is versatile enough to have many applications, from parsers for simple tools through complex programming languages.
Bison also provides an implementation of yacc, as specified by POSIX.
GNU Bison is a general-purpose parser generator. It can build a deterministic or generalized LR parser from an annotated, context-free grammar. It is versatile enough to have many applications, from parsers for simple tools through complex programming languages.
Bison also provides an implementation of yacc, as specified by POSIX.
Stig is a TUI and CLI client for the BitTorrent client Transmission.
Aria2 is a lightweight, multi-protocol & multi-source command-line download utility. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink. Aria2 can be manipulated via built-in JSON-RPC and XML-RPC interfaces.
libtorrent-rasterbar is a feature-complete C++ BitTorrent implementation focusing on efficiency and scalability. It runs on embedded devices as well as desktops.
mktorrent is a simple command-line utility to create BitTorrent metainfo files, often known simply as torrents, from both single files and whole directories. It can add multiple trackers and web seed URLs, and set the private flag to disallow advertisement through the distributed hash table (DHT) and Peer Exchange. Hashing is multi-threaded and will take advantage of multiple processor cores where possible.
qBittorrent is a BitTorrent client programmed in C++/Qt that uses libtorrent (sometimes called libtorrent-rasterbar) by Arvid Norberg.
It aims to be a good alternative to all other BitTorrent clients out there. qBittorrent is fast, stable and provides unicode support as well as many features.
transmission-remote-gtk is a GTK client for remote management of the Transmission BitTorrent client, using its HTTP RPC protocol.
rTorrent is a BitTorrent client with an ncurses interface. It supports full encryption, DHT, PEX, and Magnet Links. It can also be controlled via XML-RPC over SCGI.
libtorrent-rasterbar is a feature-complete C++ BitTorrent implementation focusing on efficiency and scalability. It runs on embedded devices as well as desktops.
qBittorrent Enhanced is a bittorrent client based on qBittorrent with the following features:
Auto Ban Xunlei, QQ, Baidu, Xfplay, DLBT and Offline downloader
Auto Ban Unknown Peer from China Option (Default: OFF)
Auto Update Public Trackers List (Default: OFF)
Auto Ban BitTorrent Media Player Peer Option (Default: OFF)
Peer whitelist/blacklist
LibTorrent is a BitTorrent library used by and developed in parallel with the BitTorrent client rtorrent. It is written in C++ with emphasis on speed and efficiency.