RStudio allows to show and navigate for the outline of a R Markdown file, but not for R Markdown projects with multiple files. For this reason, I have developed several RStudio addins capable of show project outline. Each addin is specialized in showing projects of different types: R Markdown project, bookdown package project and LaTeX project. There is a configuration file that allows you to customize additional searches.

This package provides functions to compute various clinical scores used in healthcare. These include the Charlson Comorbidity Index (CCI), predicting 10-year survival in patients with multiple comorbidities; the EPICES score, an individual indicator of precariousness considering its multidimensional nature; the MELD score for chronic liver disease severity; the Alternative Fistula Risk Score (a-FRS) for postoperative pancreatic fistula risk; and the Distal Pancreatectomy Fistula Risk Score (D-FRS) for risk following distal pancreatectomy. For detailed methodology, refer to Charlson et al. (1987) <doi:10.1016/0021-9681(87)90171-8> , Sass et al. (2006) <doi:10.1007/s10332-006-0131-5>, Kamath et al. (2001) <doi:10.1053/jhep.2001.22172>, Kim et al. (2008) <doi:10.1056/NEJMoa0801209> Kim et al. (2021) <doi:10.1053/j.gastro.2021.08.050>, Mungroop et al. (2019) <doi:10.1097/SLA.0000000000002620>, and de Pastena et al. (2023) <doi:10.1097/SLA.0000000000005497>..

Lightweight interface for converting addresses into geographic coordinates and coordinates into addresses using the ArcGIS REST API service <https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>. Address text can be converted to location candidates and locations can be converted into addresses. No API key is required.

This package provides a set of dynamic measurement models to estimate latent vote shares from noisy polling sources. The models build on Jackman (2009, ISBN: 9780470011546) and feature specialized methods for bias adjustment based on past performance and correction for asymmetric errors based on candidate political alignment.

R Interface to AutoKeras <https://autokeras.com/>. AutoKeras is an open source software library for Automated Machine Learning (AutoML). The ultimate goal of AutoML is to provide easily accessible deep learning tools to domain experts with limited data science or machine learning background. AutoKeras provides functions to automatically search for architecture and hyperparameters of deep learning models.

This package implements a multiple testing approach to the choice of a threshold gamma on the p-values using the Average Power Function (APF) and Bayes False Discovery Rate (FDR) robust estimation. Function apf_fdr() estimates both quantities from either raw data or p-values. Function apf_plot() produces smooth graphs and tables of the relevant results. Details of the methods can be found in Quatto P, Margaritella N, et al. (2019) <doi:10.1177/0962280219844288>.

This package provides a toolbox to read all R files inside a package and automatically generate @importFrom roxygen2 tags in the right place. Includes a shiny application to review the changes before applying them.

Average population attributable fractions are calculated for a set of risk factors (either binary or ordinal valued) for both prospective and case- control designs. Confidence intervals are found by Monte Carlo simulation. The method can be applied to either prospective or case control designs, provided an estimate of disease prevalence is provided. In addition to an exact calculation of AF, an approximate calculation, based on randomly sampling permutations has been implemented to ensure the calculation is computationally tractable when the number of risk factors is large.

Sample of hydro-meteorological datasets extracted from the CAMELS-FR French database <doi:10.57745/WH7FJR>. It provides metadata and catchment-scale aggregated hydro-meteorological time series on a pool of French catchments for use by the airGR packages.

Create APA style text from analyses for use within R Markdown documents. Descriptive statistics, confidence intervals, and cell sizes are reported.

This package provides a pipeable, transparent implementation of areal weighted interpolation with support for interpolating multiple variables in a single function call. These tools provide a full-featured workflow for validation and estimation that fits into both modern data management (e.g. tidyverse) and spatial data (e.g. sf) frameworks.

Checks function arguments, ideally for use in R packages. Uses a simple interface and produces clean, informative error messages using cli'.

Utilities for working with hourly air quality monitoring data with a focus on small particulates (PM2.5). A compact data model is structured as a list with two dataframes. A meta dataframe contains spatial and measuring device metadata associated with deployments at known locations. A data dataframe contains a datetime column followed by columns of measurements associated with each "device-deployment". Algorithms to calculate NowCast and the associated Air Quality Index (AQI) are defined at the US Environmental Projection Agency AirNow program: <https://document.airnow.gov/technical-assistance-document-for-the-reporting-of-daily-air-quailty.pdf>.

Estimate aquatic species life history using robust techniques. This package supports users undertaking two types of analysis: 1) Growth from length-at-age data, and 2) maturity analyses for length and/or age data. Maturity analyses are performed using generalised linear model approaches incorporating either a binomial or quasibinomial distribution. Growth modelling is performed using the multimodel approach presented by Smart et al. (2016) "Multimodel approaches in shark and ray growth studies: strengths, weaknesses and the future" <doi:10.1111/faf.12154>.

Browse through a continuously updated list of existing RStudio addins and install/uninstall their corresponding packages.

This package provides access to the species checklist published in List of the Birds of Peru by Plenge, M. A. and Angulo, F. (version 23-03-2026) <https://sites.google.com/site/boletinunop/checklist>. The package exposes the current Peru bird checklist as an R dataset and includes tools for species lookup, taxonomic reconciliation, and fuzzy matching of scientific names. These features help streamline taxonomic validation for researchers and conservationists.

This package provides functions to access data from public RESTful APIs including World Bank API and REST Countries API', retrieving real-time or historical information related to Algeria. The package enables users to query economic indicators and international demographic and geopolitical statistics in a reproducible way. It is designed for researchers, analysts, and developers who require reliable and programmatic access to Algerian data through established APIs. For more information on the APIs, see: World Bank API <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392> and REST Countries API <https://restcountries.com/>.

Continuous and discrete (count or categorical) estimation of density, probability mass function (p.m.f.) and regression functions are performed using associated kernels. The cross-validation technique and the local Bayesian procedure are also implemented for bandwidth selection.

Visualization of antibody titer scores is valuable for examination of vaccination effects. AntibodyTiters visualizes antibody titers of all or selected patients. This package also produces empty excel files in a specified format, in which users can fill in experimental data for visualization. Excel files with toy data can also be produced, so that users can see how it is visualized before obtaining real data. The data should contain titer scores at pre-vaccination, after-1st shot, after-2nd shot, and at least one additional sampling points. Patients with missing values can be included. The first two sampling points (pre-vaccination and after-1st shot) will be plotted discretely, whereas those following will be plotted on a continuous time scale that starts from the day of second shot. Half-life of titer can also be calculated for each pair of sampling points.

Client for AWS Transcribe <https://aws.amazon.com/documentation/transcribe>, a cloud transcription service that can convert an audio media file in English and other languages into a text transcript.

Wraps the Abseil C++ library for use by R packages. Provides both header files and a compiled static library ('libabsl.a') so that downstream packages can link non-header-only Abseil components without recompiling the library themselves. Original files are from <https://github.com/abseil/abseil-cpp>. Patches are located at <https://github.com/doccstat/abseil-r/tree/main/local/patches>.

This package provides a tool for calculating agreement interval of two measurement methods (Jason Liao (2015) <DOI:10.1515/ijb-2014-0030>) and present results in plots with discordance rate and/or clinically meaningful limit to quantify agreement quality.

The Brazilian Jurimetrics Association (ABJ in Portuguese, see <https://abj.org.br/> for more information) is a non-profit organization which aims to investigate and promote the use of statistics and probability in the study of Law and its institutions. This package has a set of datasets commonly used in our book.

Make summary tables for descriptive statistics and select explanatory variables automatically in various regression models. Support linear models, generalized linear models and cox-proportional hazard models. Generate publication-ready tables summarizing result of regression analysis and plots. The tables and plots can be exported in "HTML", "pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents.