This package provides the Python Client code for accessing neuroimaging templates hosted using TemplateFlow.

NiFreeze is a flexible framework for volume-to-volume motion estimation and correction in d/fMRI and PET, and eddy-current-derived distortion estimation in dMRI.

CiftiLib is a C++ library for CIFTI-2 file reading/writing. It additionally supports CIFTI-1 files, and supports both on-disk and in-memory access. It also provides C++ code for reading and writing generic NIfTI-1 and NIfTI-2 files.

CIFTI (Connectivity Informatics Technology Initiative) standardizes file formats for the storage of connectivity data. These formats are developed by the Human Connectome Project and other interested parties.

See http://www.nitrc.org/projects/cifti/ for more information.

Nilearn enables approachable and versatile analyses of brain volumes and surfaces. It provides statistical and machine-learning tools, with instructive documentation & open community.

This package provides an implementation of TRX, a tractography file format designed to facilitate dataset exchange, interoperability, and state-of-the-art analyses, acting as a community-driven replacement for the myriad existing file formats.

This package provides programs to perform rigid, affine and non-linear registration of 2D and 3D images stored as NIfTI or Analyze formats.

This package provides the version schemes used for packaging software from the NiPreps organization.

TE-dependent analysis (tedana) is a Python library for denoising multi-echo functional MRI data.

NIPY provides a platform-independent Python environment for the analysis of functional brain imaging data.

NiBabies is an open-source software pipeline designed to process anatomical and functional magnetic resonance imaging data, designed and optimized for human infants between 0-2 years old.

The etelemetry Python client facilitates communication with the etelemetry server, providing version information and checking for critical bugs in projects. The client allows you to retrieve project details and compare versions to identify and warn about problematic versions.

Connectome Workbench is a visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project. It allows exploration of data and activity on the surface, as well as in the volume of the brain.

This module provides simple, consistent access to package resources.

Nitime contains a core of numerical algorithms for time-series analysis both in the time and spectral domains, a set of container objects to represent time-series, and auxiliary objects that expose a high level interface to the numerical machinery and make common analysis tasks easy to express with compact and semantically clear code.

heudiconv is a flexible DICOM converter for organizing brain imaging data into structured directory layouts.

The nipype1-workflows repository contains legacy workflows from Nipype 1.x, showcasing nearly a decade of development in neuroimaging data processing and analysis.

FSL is a comprehensive library of analysis tools for FMRI, MRI and diffusion brain imaging data. FSLeyes is a GUI for visualizing and editing brain images, from different sources and platforms.

Nifti_clib is a set of I/O libraries for reading and writing files in the nifti-1, nifti-2, and (to some degree) cifti file formats. These are binary file formats for storing medical image data, e.g. MRI and fMRI brain images.

The fslpy package is a collection of utilities and data abstractions used within FSL and by FSLeyes.

SDCFlows (Susceptibility Distortion Correction workFlows) is a Python library of NiPype-based workflows to preprocess B0 mapping data, estimate the corresponding fieldmap and finally correct for susceptibility distortions. Susceptibility-derived distortions are typically displayed by images acquired with EPI MR schemes.

This package provides Python tools for working with the BIDS schema.

fsleyes_props is a framework for event-driven programming using Python descriptors, similar in functionality to, and influenced by Enthought Traits.

The fsleyes-widgets package contains a collection of GUI widgets and utilities, based on wxPython, which are used by fsleyes-props and FSLeyes.

MRtrix3 provides a large suite of tools for image processing, analysis and visualisation, with a focus on the analysis of white matter using diffusion-weighted MRI.