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r-help 1.68.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HELP
Licenses: GPL 2+
Build system: r
Synopsis: Tools for HELP data analysis
Description:

The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications.

r-hu35ksuba-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksuba.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba)
Description:

Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba) assembled using data from public repositories.

r-harbchip 1.48.0
Propagated dependencies: r-iranges@2.44.0 r-biostrings@2.78.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/harbChIP
Licenses: Artistic License 2.0
Build system: r
Synopsis: Experimental Data Package: harbChIP
Description:

data from a yeast ChIP-chip experiment.

r-hgu95aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu95a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\_U95A\_probe\_tab.

r-hdtd 1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/AnestisTouloumis/HDTD
Licenses: GPL 3
Build system: r
Synopsis: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Description:

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

r-humanomniexpress12v1bcrlmm 1.0.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomniexpress12v1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni Express 12 arrays using the crlmm package.

r-hthgu133b-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b)
Description:

Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) assembled using data from public repositories.

r-hgu95e-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95e.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HG_U95E Array annotation data (chip hgu95e)
Description:

Affymetrix Affymetrix HG_U95E Array annotation data (chip hgu95e) assembled using data from public repositories.

r-hicontacts 1.12.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/js2264/HiContacts
Licenses: Expat
Build system: r
Synopsis: Analysing cool files in R with HiContacts
Description:

HiContacts provides a collection of tools to analyse and visualize Hi-C datasets imported in R by HiCExperiment.

r-hugene-1-0-st-v1frmavecs 1.1.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene.1.0.st.v1frmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type hugene.1.0.st.v1frmavecs
Description:

This package was created by frmaTools version 1.13.0.

r-htrat230pmcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htrat230pmcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htrat230pmcdf
Description:

This package provides a package containing an environment representing the HT_Rat230_PM.cdf file.

r-hilbertcurve 2.4.2
Propagated dependencies: r-rcpp@1.1.0 r-polylabelr@0.3.0 r-png@0.1-8 r-iranges@2.44.0 r-genomicranges@1.62.0 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/jokergoo/HilbertCurve
Licenses: Expat
Build system: r
Synopsis: Making 2D Hilbert Curve
Description:

Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.

r-hu35ksubdprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubdprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu35ksubd
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubD\_probe\_tab.

r-humanomni25quadv1bcrlmm 1.0.2
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomni25quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni2.5 Quad arrays using the crlmm package.

r-hibed 1.8.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/SalasLab/HiBED
Licenses: GPL 3
Build system: r
Synopsis: HiBED
Description:

Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation. The HiBED deconvolution estimates proportions up to 7 cell types (GABAergic neurons, glutamatergic neurons, astrocytes, microglial cells, oligodendrocytes, endothelial cells, and stromal cells) in bulk brain tissues.

r-hgu133a2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133a2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133a2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_2\_probe\_tab.

r-huexexonprobesetlocation 1.15.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HuExExonProbesetLocation
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type HuEx
Description:

This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.

r-hierinf 1.28.0
Propagated dependencies: r-glmnet@4.1-10 r-fmsb@0.7.6
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hierinf
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Hierarchical Inference
Description:

This package provides tools to perform hierarchical inference for one or multiple studies / data sets based on high-dimensional multivariate (generalised) linear models. A possible application is to perform hierarchical inference for GWA studies to find significant groups or single SNPs (if the signal is strong) in a data-driven and automated procedure. The method is based on an efficient hierarchical multiple testing correction and controls the FWER. The functions can easily be run in parallel.

r-hcg110-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HC_G110 Array annotation data (chip hcg110)
Description:

Affymetrix Affymetrix HC_G110 Array annotation data (chip hcg110) assembled using data from public repositories.

r-healthycontrolspresencechecker 1.14.0
Propagated dependencies: r-xml2@1.5.0 r-magrittr@2.0.4 r-geoquery@2.78.0 r-geneexpressionfromgeo@1.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/davidechicco/healthyControlsPresenceChecker
Licenses: GPL 3
Build system: r
Synopsis: Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not
Description:

This package provides a function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

r-hiergwas 1.40.0
Propagated dependencies: r-glmnet@4.1-10 r-fmsb@0.7.6 r-fastcluster@1.3.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hierGWAS
Licenses: GPL 3
Build system: r
Synopsis: Asessing statistical significance in predictive GWA studies
Description:

Testing individual SNPs, as well as arbitrarily large groups of SNPs in GWA studies, using a joint model of all SNPs. The method controls the FWER, and provides an automatic, data-driven refinement of the SNP clusters to smaller groups or single markers.

r-hthgu133bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hthgu133b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_HG-U133B\_probe\_tab.

r-hgu133plus2cellscore 1.30.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2CellScore
Licenses: GPL 3
Build system: r
Synopsis: CellScore Standard Cell Types Expression Dataset [hgu133plus2]
Description:

The CellScore Standard Dataset contains expression data from a wide variety of human cells and tissues, which should be used as standard cell types in the calculation of the CellScore. All data was curated from public databases such as Gene Expression Omnibus (https://www.ncbi.nlm.nih.gov/geo/) or ArrayExpress (https://www.ebi.ac.uk/arrayexpress/). This standard dataset only contains data from the Affymetrix GeneChip Human Genome U133 Plus 2.0 microarrays. Samples were manually annotated using the database information or consulting the publications in which the datasets originated. The sample annotations are stored in the phenoData slot of the expressionSet object. Raw data (CEL files) were processed with the affy package to generate present/absent calls (mas5calls) and background-subtracted values, which were then normalized by the R-package yugene to yield the final expression values for the standard expression matrix. The annotation table for the microarray was retrieved from the BioC annotation package hgu133plus2. All data are stored in an expressionSet object.

r-hgug4111a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4111a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Human 1B annotation data (chip hgug4111a)
Description:

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.

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Total results: 69112