_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


rgbds 0.1.2
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: non-copyleft
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

rgbds 0.2.0
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: non-copyleft
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

rgbds 0.3.7
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: Expat
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

rgbds 0.3.10
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: Expat
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

rgbds 0.2.2
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: non-copyleft
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

rgbds 0.2.3
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: non-copyleft
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

rgbds 0.3.5
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: Expat
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

rgbds 0.2.4
Dependencies: libpng@1.6.39
Channel: guix-past
Location: past/packages/assembly.scm (past packages assembly)
Home page: https://github.com/gbdev/rgbds
Licenses: non-copyleft
Synopsis: Rednex Game Boy Development System
Description:

RGBDS (Rednex Game Boy Development System) is an assembler/linker package for the Game Boy and Game Boy Color. It consists of:

  • rgbasm (assembler)

  • rgblink (linker)

  • rgbfix (checksum/header fixer)

  • rgbgfx (PNG-to-Game Boy graphics converter)

autoconf 2.59
Dependencies: bash-minimal@5.2.37 m4@1.4.19 perl@5.36.0
Channel: guix-past
Location: past/packages/autotools.scm (past packages autotools)
Home page: https://www.gnu.org/software/autoconf/
Licenses: GPL 3+
Synopsis: Create source code configuration scripts
Description:

Autoconf offers the developer a robust set of M4 macros which expand into shell code to test the features of Unix-like systems and to adapt automatically their software package to these systems. The resulting shell scripts are self-contained and portable, freeing the user from needing to know anything about Autoconf or M4.

libtool 1.5.22
Channel: guix-past
Location: past/packages/autotools.scm (past packages autotools)
Home page: https://www.gnu.org/software/libtool/
Licenses: GPL 3+
Synopsis: Generic shared library support tools
Description:

GNU Libtool helps in the creation and use of shared libraries, by presenting a single consistent, portable interface that hides the usual complexity of working with shared libraries across platforms.

automake 1.9.6
Dependencies: guile@2.2.7
Channel: guix-past
Location: past/packages/autotools.scm (past packages autotools)
Home page: https://www.gnu.org/software/automake/
Licenses: GPL 2+
Synopsis: Making GNU standards-compliant Makefiles
Description:

Automake the part of the GNU build system for producing standards-compliant Makefiles. Build requirements are entered in an intuitive format and then Automake works with Autoconf to produce a robust Makefile, simplifying the entire process for the developer.

htslib 1.2.1
Dependencies: bzip2@1.0.8 curl@8.6.0 openssl@3.0.8 xz@5.4.5
Propagated dependencies: htscodecs@1.6.1 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://www.htslib.org
Licenses: Expat Modified BSD
Synopsis: C library for reading/writing high-throughput sequencing data
Description:

HTSlib is a C library for reading/writing high-throughput sequencing data. It also provides the bgzip, htsfile, and tabix utilities.

samtools 1.4.1
Dependencies: htslib@1.4.1 ncurses@6.2.20210619 perl@5.36.0 python@3.11.11 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://samtools.sourceforge.net
Licenses: Expat
Synopsis: Utilities to efficiently manipulate nucleotide sequence alignments
Description:

Samtools implements various utilities for post-processing nucleotide sequence alignments in the SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer.

r-sccustomize 0.7.0-1.8414d1f
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://github.com/samuel-marsh/scCustomize
Licenses: GPL 3+
Synopsis: Custom visualization and analyses of single-cell sequencing
Description:

This is a collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

couger 1.8.2
Dependencies: python2@2.7.18 python2-pillow@6.2.2 python2-numpy@1.16.6 python2-scipy@1.2.3 python2-matplotlib@2.2.5
Propagated dependencies: r-minimal@4.5.0 libsvm@336 randomjungle@2.1.0
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: http://couger.oit.duke.edu
Licenses: GPL 3+
Synopsis: Identify co-factors in sets of genomic regions
Description:

COUGER can be applied to any two sets of genomic regions bound by paralogous TFs (e.g., regions derived from ChIP-seq experiments) to identify putative co-factors that provide specificity to each TF. The framework determines the genomic targets uniquely-bound by each TF, and identifies a small set of co-factors that best explain the in vivo binding differences between the two TFs.

COUGER uses classification algorithms (support vector machines and random forests) with features that reflect the DNA binding specificities of putative co-factors. The features are generated either from high-throughput TF-DNA binding data (from protein binding microarray experiments), or from large collections of DNA motifs.

htslib 1.4.1
Dependencies: bzip2@1.0.8 curl@8.6.0 openssl@3.0.8 xz@5.4.5
Propagated dependencies: htscodecs@1.6.1 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://www.htslib.org
Licenses: Expat Modified BSD
Synopsis: C library for reading/writing high-throughput sequencing data
Description:

HTSlib is a C library for reading/writing high-throughput sequencing data. It also provides the bgzip, htsfile, and tabix utilities.

htslib 1.5
Dependencies: bzip2@1.0.8 curl@8.6.0 openssl@3.0.8 xz@5.4.5
Propagated dependencies: htscodecs@1.6.1 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://www.htslib.org
Licenses: Expat Modified BSD
Synopsis: C library for reading/writing high-throughput sequencing data
Description:

HTSlib is a C library for reading/writing high-throughput sequencing data. It also provides the bgzip, htsfile, and tabix utilities.

bcftools 1.5
Dependencies: gsl@2.8 htslib@1.5 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://samtools.github.io/bcftools/
Licenses: GPL 3+ Expat
Synopsis: Utilities for variant calling and manipulating VCFs and BCFs
Description:

BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

htslib 1.0
Dependencies: bzip2@1.0.8 curl@8.6.0 openssl@3.0.8 xz@5.4.5
Propagated dependencies: htscodecs@1.6.1 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://www.htslib.org
Licenses: Expat Modified BSD
Synopsis: C library for reading/writing high-throughput sequencing data
Description:

HTSlib is a C library for reading/writing high-throughput sequencing data. It also provides the bgzip, htsfile, and tabix utilities.

qtltools 1.0
Dependencies: boost@1.83.0 curl@8.6.0 gsl@2.8 htslib@1.3.1 openblas@0.3.30 openssl@3.0.8 rmath-standalone@4.5.0 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://qtltools.github.io/qtltools/
Licenses: GPL 3+
Synopsis: Tool set for molecular QTL discovery and analysis
Description:

QTLtools is a tool set for molecular QTL discovery and analysis. It allows going from the raw genetic sequence data to collection of molecular Quantitative Trait Loci (QTLs) in few easy-to-perform steps.

samtools 0.1.8
Dependencies: htslib@1.21 ncurses@6.2.20210619 perl@5.36.0 python@3.11.11 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://samtools.sourceforge.net
Licenses: Expat
Synopsis: Utilities to efficiently manipulate nucleotide sequence alignments
Description:

Samtools implements various utilities for post-processing nucleotide sequence alignments in the SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer.

bamm 1.7.3
Dependencies: htslib@1.3.1 samtools@1.19 bwa@0.7.18 grep@3.11 sed@4.9 coreutils@9.1
Propagated dependencies: python2-numpy@1.16.6
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://ecogenomics.github.io/BamM/
Licenses: LGPL 3+
Synopsis: Metagenomics-focused BAM file manipulator
Description:

BamM is a C library, wrapped in Python, to efficiently generate and parse BAM files, specifically for the analysis of metagenomic data. For instance, it implements several methods to assess contig-wise read coverage.

htslib 1.1
Dependencies: bzip2@1.0.8 curl@8.6.0 openssl@3.0.8 xz@5.4.5
Propagated dependencies: htscodecs@1.6.1 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://www.htslib.org
Licenses: Expat Modified BSD
Synopsis: C library for reading/writing high-throughput sequencing data
Description:

HTSlib is a C library for reading/writing high-throughput sequencing data. It also provides the bgzip, htsfile, and tabix utilities.

htslib 1.3.1
Dependencies: bzip2@1.0.8 curl@8.6.0 openssl@3.0.8 xz@5.4.5
Propagated dependencies: htscodecs@1.6.1 zlib@1.3.1
Channel: guix-past
Location: past/packages/bioinformatics.scm (past packages bioinformatics)
Home page: https://www.htslib.org
Licenses: Expat Modified BSD
Synopsis: C library for reading/writing high-throughput sequencing data
Description:

HTSlib is a C library for reading/writing high-throughput sequencing data. It also provides the bgzip, htsfile, and tabix utilities.

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Total results: 67086