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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-occ 1.2
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=occ
Licenses: GPL 3
Build system: r
Synopsis: Estimation of PET Neuroreceptor Occupancies
Description:

Estimate the positron emission tomography (PET) neuroreceptor occupancies from the total volumes of distribution of a set of regions of interest. Fitting methods include the simple reference region', ordinary least squares (sometimes known as occupancy plot), and restricted maximum likelihood estimation'.

r-ows4r 0.5
Propagated dependencies: r-xml@3.99-0.20 r-terra@1.8-86 r-sf@1.0-23 r-r6@2.6.1 r-openssl@2.3.4 r-keyring@1.4.1 r-httr@1.4.7 r-geometa@0.9.3 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/eblondel/ows4R
Licenses: Expat
Build system: r
Synopsis: Interface to OGC Web-Services (OWS)
Description:

This package provides an Interface to Web-Services defined as standards by the Open Geospatial Consortium (OGC), including Web Feature Service (WFS) for vector data, Web Coverage Service (WCS), Catalogue Service (CSW) for ISO/OGC metadata, Web Processing Service (WPS) for data processes, and associated standards such as the common web-service specification (OWS) and OGC Filter Encoding. Partial support is provided for the Web Map Service (WMS). The purpose is to add support for additional OGC service standards such as Web Coverage Processing Service (WCPS), the Sensor Observation Service (SOS), or even new standard services emerging such OGC API or SensorThings.

r-onomasticdiversity 0.1
Propagated dependencies: r-sqldf@0.4-11
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OnomasticDiversity
Licenses: GPL 2
Build system: r
Synopsis: Onomastic Diversity Measures
Description:

Different measures which can be used to quantify similarities between regions. These measures are isonymy, isonymy between, Lasker distance, coefficients of Hedrick and Nei. In addition, it calculates biodiversity indices such as Margalef, Menhinick, Simpson, Shannon, Shannon-Wiener, Sheldon, Heip, Hill Numbers, Geometric Mean and Cressie and Read statistics.

r-openmpp 0.0.1
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-rlang@1.1.6 r-readr@2.1.6 r-r6@2.6.1 r-purrr@1.2.0 r-jsonlite@2.0.0 r-httr2@1.2.1 r-glue@1.8.0 r-curl@7.0.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/mattwarkentin/openmpp
Licenses: Expat
Build system: r
Synopsis: Programmatic Interface to 'OpenM++'
Description:

This package provides a programmatic interface to the OpenM++ microsimulation platform (<https://openmpp.org>). The primary goal of this package is to wrap the OpenM++ Web Service (OMS) to provide OpenM++ users a programmatic interface for the R language.

r-outcomerate 1.0.1
Propagated dependencies: r-rdpack@2.6.4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/ropensci/outcomerate
Licenses: CC0
Build system: r
Synopsis: AAPOR Survey Outcome Rates
Description:

Standardized survey outcome rate functions, including the response rate, contact rate, cooperation rate, and refusal rate. These outcome rates allow survey researchers to measure the quality of survey data using definitions published by the American Association of Public Opinion Research (AAPOR). For details on these standards, see AAPOR (2016) <https://www.aapor.org/Standards-Ethics/Standard-Definitions-(1).aspx>.

r-openesm 0.1.2
Propagated dependencies: r-tibble@3.3.0 r-readr@2.1.6 r-purrr@1.2.0 r-jsonlite@2.0.0 r-httr2@1.2.1 r-fs@1.6.6 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/openesm-project/openesm-r
Licenses: Expat
Build system: r
Synopsis: Access the Open Experience Sampling Method Database
Description:

This package provides programmatic access to the Open Experience Sampling Method ('openESM') database (<https://openesmdata.org>), a collection of harmonized experience sampling datasets. The package enables researchers to discover, download, and work with the datasets while ensuring proper citation and license compliance.

r-outforest 1.0.1
Propagated dependencies: r-ranger@0.17.0 r-missranger@2.6.1 r-fnn@1.1.4.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/mayer79/outForest
Licenses: GPL 2+
Build system: r
Synopsis: Multivariate Outlier Detection and Replacement
Description:

This package provides a random forest based implementation of the method described in Chapter 7.1.2 (Regression model based anomaly detection) of Chandola et al. (2009) <doi:10.1145/1541880.1541882>. It works as follows: Each numeric variable is regressed onto all other variables by a random forest. If the scaled absolute difference between observed value and out-of-bag prediction of the corresponding random forest is suspiciously large, then a value is considered an outlier. The package offers different options to replace such outliers, e.g. by realistic values found via predictive mean matching. Once the method is trained on a reference data, it can be applied to new data.

r-optimalsurrogate 1.0
Propagated dependencies: r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OptimalSurrogate
Licenses: GPL 3
Build system: r
Synopsis: Model Free Approach to Quantifying Surrogacy
Description:

Identifies an optimal transformation of a surrogate marker such that the proportion of treatment effect explained can be inferred based on the transformation of the surrogate and nonparametrically estimates two model-free quantities of this proportion. Details are described in Wang et al (2020) <doi:10.1093/biomet/asz065>.

r-od 0.5.1
Propagated dependencies: r-vctrs@0.6.5 r-sfheaders@0.4.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/itsleeds/od
Licenses: GPL 3
Build system: r
Synopsis: Manipulate and Map Origin-Destination Data
Description:

The aim of od is to provide tools and example datasets for working with origin-destination ('OD') datasets of the type used to describe aggregate urban mobility patterns (Carey et al. 1981) <doi:10.1287/trsc.15.1.32>. The package builds on functions for working with OD data in the package stplanr', (Lovelace and Ellison 2018) <doi:10.32614/RJ-2018-053> with a focus on computational efficiency and support for the sf class system (Pebesma 2018) <doi:10.32614/RJ-2018-009>. With few dependencies and a simple class system based on data frames, the package is intended to facilitate efficient analysis of OD datasets and to provide a place for developing new functions. The package enables the creation and analysis of geographic entities representing large scale mobility patterns, from daily travel between zones in cities to migration between countries.

r-optrcdmaeat 1.0.1
Propagated dependencies: r-matrix@1.7-4 r-mass@7.3-65 r-igraph@2.2.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=optrcdmaeAT
Licenses: GPL 2
Build system: r
Synopsis: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments
Description:

Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2018) <doi:10.1080/03610918.2018.1429617> algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.

r-oor 0.1.4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/mbinois/OOR
Licenses: LGPL 2.0+
Build system: r
Synopsis: Optimistic Optimization in R
Description:

Implementation of optimistic optimization methods for global optimization of deterministic or stochastic functions. The algorithms feature guarantees of the convergence to a global optimum. They require minimal assumptions on the (only local) smoothness, where the smoothness parameter does not need to be known. They are expected to be useful for the most difficult functions when we have no information on smoothness and the gradients are unknown or do not exist. Due to the weak assumptions, however, they can be mostly effective only in small dimensions, for example, for hyperparameter tuning.

r-objectsignals 0.10.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=objectSignals
Licenses: GPL 2+
Build system: r
Synopsis: Observer Pattern for S4
Description:

This package provides a mutable Signal object can report changes to its state, clients could register functions so that they are called whenever the signal is emitted. The signal could be emitted, disconnected, blocked, unblocked, and buffered.

r-oclust 1.0.0
Propagated dependencies: r-progress@1.2.3 r-mvtnorm@1.3-3 r-mixture@2.2.0 r-mclust@6.1.2 r-mass@7.3-65 r-entropy@1.3.2 r-dbscan@1.2.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=oclust
Licenses: GPL 2+
Build system: r
Synopsis: Gaussian Model-Based Clustering with Outliers
Description:

This package provides a function to detect and trim outliers in Gaussian mixture model-based clustering using methods described in Clark and McNicholas (2024) <doi:10.1007/s00357-024-09473-3>.

r-odin 1.2.7
Propagated dependencies: r-withr@3.0.2 r-ring@1.0.8 r-r6@2.6.1 r-jsonlite@2.0.0 r-glue@1.8.0 r-digest@0.6.39 r-desolve@1.40 r-cinterpolate@1.0.2
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/mrc-ide/odin
Licenses: Expat
Build system: r
Synopsis: ODE Generation and Integration
Description:

Generate systems of ordinary differential equations (ODE) and integrate them, using a domain specific language (DSL). The DSL uses R's syntax, but compiles to C in order to efficiently solve the system. A solver is not provided, but instead interfaces to the packages deSolve and dde are generated. With these, while solving the differential equations, no allocations are done and the calculations remain entirely in compiled code. Alternatively, a model can be transpiled to R for use in contexts where a C compiler is not present. After compilation, models can be inspected to return information about parameters and outputs, or intermediate values after calculations. odin is not targeted at any particular domain and is suitable for any system that can be expressed primarily as mathematical expressions. Additional support is provided for working with delays (delay differential equations, DDE), using interpolated functions during interpolation, and for integrating quantities that represent arrays.

r-ovl-ci 0.1.1
Propagated dependencies: r-mixtools@2.0.0.1 r-matrix@1.7-4 r-ks@1.15.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OVL.CI
Licenses: GPL 2
Build system: r
Synopsis: Inference on the Overlap Coefficient
Description:

This package provides functions to construct confidence intervals for the Overlap Coefficient (OVL). OVL measures the similarity between two distributions through the overlapping area of their distribution functions. Given its intuitive description and ease of visual representation by the straightforward depiction of the amount of overlap between the two corresponding histograms based on samples of measurements from each one of the two distributions, the development of accurate methods for confidence interval construction can be useful for applied researchers. Implements methods based on the work of Franco-Pereira, A.M., Nakas, C.T., Reiser, B., and Pardo, M.C. (2021) <doi:10.1177/09622802211046386> as well as extensions for multimodal distributions proposed by Alcaraz-Peñalba, A., Franco-Pereira, A., and Pardo, M.C. (2025) <doi:10.1007/s10182-025-00545-2>.

r-orloca-es 5.5
Propagated dependencies: r-orloca@5.6
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: http://knuth.uca.es/orloca/
Licenses: GPL 3+
Build system: r
Synopsis: Spanish version of orloca package. Modelos de localizacion en investigacion operativa
Description:

Help and demo in Spanish of the orloca package. Ayuda y demo en espanol del paquete orloca. Objetos y metodos para manejar y resolver el problema de localizacion de suma minima, tambien conocido como problema de Fermat-Weber. El problema de localizacion de suma minima busca un punto tal que la suma ponderada de las distancias a los puntos de demanda se minimice. Vease "The Fermat-Weber location problem revisited" por Brimberg, Mathematical Programming, 1, pag. 71-76, 1995. <DOI: 10.1007/BF01592245>. Se usan algoritmos generales de optimizacion global para resolver el problema, junto con el metodo especifico Weiszfeld, vease "Sur le point pour lequel la Somme des distance de n points donnes est minimum", por Weiszfeld, Tohoku Mathematical Journal, First Series, 43, pag. 355-386, 1937 o "On the point for which the sum of the distances to n given points is minimum", por E. Weiszfeld y F. Plastria, Annals of Operations Research, 167, pg. 7-41, 2009. <DOI:10.1007/s10479-008-0352-z>.

r-oglcnac 0.1.5
Propagated dependencies: r-shiny@1.11.1 r-readxl@1.4.5 r-jsonlite@2.0.0 r-httr@1.4.7 r-glue@1.8.0 r-dt@0.34.0 r-cli@3.6.5 r-bslib@0.9.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=oglcnac
Licenses: GPL 3
Build system: r
Synopsis: Processing and Analysis of 'O-GlcNAcAtlas' Data
Description:

This package provides tools for processing and analyzing data from the O-GlcNAcAtlas database <https://oglcnac.org/>, as described in Ma (2021) <doi:10.1093/glycob/cwab003>. It integrates UniProt <https://www.uniprot.org/> API calls to retrieve additional information. It is specifically designed for research workflows involving O-GlcNAcAtlas data, providing a flexible and user-friendly interface for customizing and downloading processed results. Interactive elements allow users to easily adjust parameters and handle various biological datasets.

r-orcamentobr 1.0.5
Propagated dependencies: r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=orcamentoBR
Licenses: GPL 3+
Build system: r
Synopsis: Download Official Data on Brazil's Federal Budget
Description:

Allows users to download and analyze official data on Brazil's federal budget through the SPARQL endpoint provided by the Integrated Budget and Planning System ('SIOP'). This package enables access to detailed information on budget allocations and expenditures of the federal government, making it easier to analyze and visualize these data. Technical information on the Brazilian federal budget is available (Portuguese only) at <https://www1.siop.planejamento.gov.br/mto/>. The SIOP endpoint is available at <https://www1.siop.planejamento.gov.br/sparql/>.

r-omicnavigator 1.19.0
Propagated dependencies: r-jsonlite@2.0.0 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/abbvie-external/OmicNavigator
Licenses: Expat
Build system: r
Synopsis: Open-Source Software for 'Omic' Data Analysis and Visualization
Description:

This package provides a tool for interactive exploration of the results from omics experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the bioinformatician to deposit study metadata and the outputs from statistical analyses (e.g. differential expression, enrichment). These results are then exported to an interactive JavaScript dashboard that can be interrogated on the user's local machine or deployed online to be explored by collaborators. The dashboard includes sortable tables, interactive plots including network visualization, and fine-grained filtering based on statistical significance.

r-oddsratio 2.0.2
Propagated dependencies: r-mgcv@1.9-4 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/pat-s/oddsratio
Licenses: Expat
Build system: r
Synopsis: Odds Ratio Calculation for GAM(M)s & GLM(M)s
Description:

Simplified odds ratio calculation of GAM(M)s & GLM(M)s. Provides structured output (data frame) of all predictors and their corresponding odds ratios and confident intervals for further analyses. It helps to avoid false references of predictors and increments by specifying these parameters in a list instead of using exp(coef(model)) (standard approach of odds ratio calculation for GLMs) which just returns a plain numeric output. For GAM(M)s, odds ratio calculation is highly simplified with this package since it takes care of the multiple predict() calls of the chosen predictor while holding other predictors constant. Also, this package allows odds ratio calculation of percentage steps across the whole predictor distribution range for GAM(M)s. In both cases, confident intervals are returned additionally. Calculated odds ratio of GAM(M)s can be inserted into the smooth function plot.

r-ogrdbstats 0.5.4
Propagated dependencies: r-tigger@1.1.2 r-tidyr@1.3.1 r-stringr@1.6.0 r-stringdist@0.9.15 r-scales@1.4.0 r-rcolorbrewer@1.1-3 r-magrittr@2.0.4 r-gridextra@2.3 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-data-table@1.17.8 r-complexheatmap@2.26.0 r-bookdown@0.45 r-biostrings@2.78.0 r-argparser@0.7.2 r-alakazam@1.4.2
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/airr-community/ogrdbstats
Licenses: CC-BY-SA 4.0
Build system: r
Synopsis: Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics
Description:

Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of novel germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.

r-oner 2.2
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/vonjd/OneR
Licenses: Expat
Build system: r
Synopsis: One Rule Machine Learning Classification Algorithm with Enhancements
Description:

This package implements the One Rule (OneR) Machine Learning classification algorithm (Holte, R.C. (1993) <doi:10.1023/A:1022631118932>) with enhancements for sophisticated handling of numeric data and missing values together with extensive diagnostic functions. It is useful as a baseline for machine learning models and the rules are often helpful heuristics.

r-opitools 1.8.0
Propagated dependencies: r-wordcloud2@0.2.1 r-tm@0.7-16 r-tidytext@0.4.3 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-purrr@1.2.0 r-magrittr@2.0.4 r-likert@1.3.5.1 r-ggplot2@4.0.1 r-forcats@1.0.1 r-dplyr@1.1.4 r-cowplot@1.2.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/MAnalytics/opitools
Licenses: GPL 3
Build system: r
Synopsis: Analyzing the Opinions in a Big Text Document
Description:

Designed for performing impact analysis of opinions in a digital text document (DTD). The package allows a user to assess the extent to which a theme or subject within a document impacts the overall opinion expressed in the document. The package can be applied to a wide range of opinion-based DTD, including commentaries on social media platforms (such as Facebook', Twitter and Youtube'), online products reviews, and so on. The utility of opitools was originally demonstrated in Adepeju and Jimoh (2021) <doi:10.31235/osf.io/c32qh> in the assessment of COVID-19 impacts on neighbourhood policing using Twitter data. Further examples can be found in the vignette of the package.

r-osc 1.0.5
Propagated dependencies: r-raster@3.6-32
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://www.pik-potsdam.de/~kriewald/osc/
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Orthodromic Spatial Clustering
Description:

Allows distance based spatial clustering of georeferenced data by implementing the City Clustering Algorithm - CCA. Multiple versions allow clustering for a matrix, raster and single coordinates on a plain (Euclidean distance) or on a sphere (great-circle or orthodromic distance).

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