_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pd-hg-u95d 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95d
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95D
Description:

Platform Design Info for The Manufacturer's Name HG_U95D.

r-phyloprofiledata 1.24.0
Propagated dependencies: r-experimenthub@3.0.0 r-biostrings@2.78.0 r-biocstyle@2.38.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/BIONF/PhyloProfileData
Licenses: Expat
Build system: r
Synopsis: Data package for phylogenetic profile analysis using PhyloProfile tool
Description:

Two experimental datasets to illustrate running and analysing phylogenetic profiles with PhyloProfile package.

r-pd-mogene-2-1-st 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mogene.2.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MoGene-2_1-st
Description:

Platform Design Info for Affymetrix MoGene-2_1-st.

r-pd-felgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.felgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix FelGene-1_0-st
Description:

Platform Design Info for Affymetrix FelGene-1_0-st.

r-pgxrpi 1.6.0
Propagated dependencies: r-yaml@2.3.10 r-survminer@0.5.1 r-survival@3.8-3 r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-lubridate@1.9.4 r-httr@1.4.7 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-future-apply@1.20.0 r-future@1.68.0 r-dplyr@1.1.4 r-circlize@0.4.16 r-attempt@0.3.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/progenetix/pgxRpi
Licenses: Artistic License 2.0
Build system: r
Synopsis: R wrapper for Progenetix
Description:

The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix database—an open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.

r-pd-mg-u74av2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74av2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74Av2
Description:

Platform Design Info for The Manufacturer's Name MG_U74Av2.

r-pmp 1.22.1
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-reshape2@1.4.5 r-pcamethods@2.2.0 r-missforest@1.6.1 r-matrixstats@1.5.0 r-impute@1.84.0 r-ggplot2@4.0.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pmp
Licenses: GPL 3
Build system: r
Synopsis: Peak Matrix Processing and signal batch correction for metabolomics datasets
Description:

This package provides methods and tools for (pre-)processing of metabolomics datasets (i.e. peak matrices), including filtering, normalisation, missing value imputation, scaling, and signal drift and batch effect correction methods. Filtering methods are based on: the fraction of missing values (across samples or features); Relative Standard Deviation (RSD) calculated from the Quality Control (QC) samples; the blank samples. Normalisation methods include Probabilistic Quotient Normalisation (PQN) and normalisation to total signal intensity. A unified user interface for several commonly used missing value imputation algorithms is also provided. Supported methods are: k-nearest neighbours (knn), random forests (rf), Bayesian PCA missing value estimator (bpca), mean or median value of the given feature and a constant small value. The generalised logarithm (glog) transformation algorithm is available to stabilise the variance across low and high intensity mass spectral features. Finally, this package provides an implementation of the Quality Control-Robust Spline Correction (QCRSC) algorithm for signal drift and batch effect correction of mass spectrometry-based datasets.

r-pd-hugene-2-0-st 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hugene.2.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix HuGene-2_0-st
Description:

Platform Design Info for Affymetrix HuGene-2_0-st.

r-pd-zebgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.zebgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix ZebGene-1_0-st
Description:

Platform Design Info for Affymetrix ZebGene-1_0-st.

r-primeviewcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/primeviewcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: primeviewcdf
Description:

This package provides a package containing an environment representing the PrimeView.cdf file.

r-pd-zebrafish 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.zebrafish
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Zebrafish
Description:

Platform Design Info for The Manufacturer's Name Zebrafish.

r-plyxp 1.4.3
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/jtlandis/plyxp
Licenses: Expat
Build system: r
Synopsis: Data masks for SummarizedExperiment enabling dplyr-like manipulation
Description:

The package provides `rlang` data masks for the SummarizedExperiment class. The enables the evaluation of unquoted expression in different contexts of the SummarizedExperiment object with optional access to other contexts. The goal for `plyxp` is for evaluation to feel like a data.frame object without ever needing to unwind to a rectangular data.frame.

r-pd-margene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.margene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MarGene-1_1-st
Description:

Platform Design Info for Affymetrix MarGene-1_1-st.

r-pd-clariom-d-human 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.clariom.d.human
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Clariom_D_Human
Description:

Platform Design Info for Affymetrix Clariom_D_Human.

r-porcine-db 3.13.0
Propagated dependencies: r-org-ss-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/porcine.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Porcine Array annotation data (chip porcine)
Description:

Affymetrix Affymetrix Porcine Array annotation data (chip porcine) assembled using data from public repositories.

r-pd-rn-u34 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rn.u34
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name RN_U34
Description:

Platform Design Info for The Manufacturer's Name RN_U34.

r-pd-cyrgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cyrgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix CyRGene-1_0-st
Description:

Platform Design Info for Affymetrix CyRGene-1_0-st.

r-pd-hg-u95a 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95A
Description:

Platform Design Info for The Manufacturer's Name HG_U95A.

r-pvca 1.50.0
Propagated dependencies: r-vsn@3.78.0 r-matrix@1.7-4 r-lme4@1.1-37 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pvca
Licenses: LGPL 2.0+
Build system: r
Synopsis: Principal Variance Component Analysis (PVCA)
Description:

This package contains the function to assess the batch sourcs by fitting all "sources" as random effects including two-way interaction terms in the Mixed Model(depends on lme4 package) to selected principal components, which were obtained from the original data correlation matrix. This package accompanies the book "Batch Effects and Noise in Microarray Experiements, chapter 12.

r-pd-rhegene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rhegene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RheGene-1_1-st
Description:

Platform Design Info for Affymetrix RheGene-1_1-st.

r-pd-hg-u95c 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95c
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95C
Description:

Platform Design Info for The Manufacturer's Name HG_U95C.

r-pd-aragene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.aragene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix AraGene-1_0-st
Description:

Platform Design Info for Affymetrix AraGene-1_0-st.

r-podcall 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PoDCall
Licenses: GPL 3
Build system: r
Synopsis: Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Description:

Reads files exported from QX Manager or QuantaSoft containing amplitude values from a run of ddPCR (96 well plate) and robustly sets thresholds to determine positive droplets for each channel of each individual well. Concentration and normalized concentration in addition to other metrics is then calculated for each well. Results are returned as a table, optionally written to file, as well as optional plots (scatterplot and histogram) for both channels per well written to file. The package includes a shiny application which provides an interactive and user-friendly interface to the full functionality of PoDCall.

r-pd-mirna-3-0 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.3.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-3_0
Description:

Platform Design Info for Affymetrix miRNA-3_0.

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Total results: 69112