_            _    _        _         _
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      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-huo22-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HuO22.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)
Description:

FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22) assembled using data from public repositories.

r-hapmap500ksty 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmap500ksty
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap 500K STY Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-hugene11stprobeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene11stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene11 annotation data (chip hugene11stprobeset)
Description:

Affymetrix hugene11 annotation data (chip hugene11stprobeset) assembled using data from public repositories.

r-hicdoc 1.12.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-summarizedexperiment@1.40.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rcpp@1.1.0 r-pbapply@1.7-4 r-multihiccompare@1.28.0 r-interactionset@1.38.0 r-gtools@3.9.5 r-gridextra@2.3 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-data-table@1.17.8 r-cowplot@1.2.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/mzytnicki/HiCDOC
Licenses: LGPL 3
Build system: r
Synopsis: A/B compartment detection and differential analysis
Description:

HiCDOC normalizes intrachromosomal Hi-C matrices, uses unsupervised learning to predict A/B compartments from multiple replicates, and detects significant compartment changes between experiment conditions. It provides a collection of functions assembled into a pipeline to filter and normalize the data, predict the compartments and visualize the results. It accepts several type of data: tabular `.tsv` files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files.

r-hu35ksubdprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubdprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu35ksubd
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubD\_probe\_tab.

r-hgu133aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_probe\_tab.

r-hmp2data 1.24.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-readr@2.1.6 r-phyloseq@1.54.0 r-multiassayexperiment@1.36.1 r-magrittr@2.0.4 r-knitr@1.50 r-kableextra@1.4.0 r-experimenthub@3.0.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-assertthat@0.2.1 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/jstansfield0/HMP2Data
Licenses: Artistic License 2.0
Build system: r
Synopsis: 16s rRNA sequencing data from the Human Microbiome Project 2
Description:

HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.

r-hsagilentdesign026652-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HsAgilentDesign026652.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652)
Description:

Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories.

r-hapmapsnp5 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmapsnp5
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap SNP 5.0 Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-hu6800subccdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800subccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800subccdf
Description:

This package provides a package containing an environment representing the Hu6800subC.CDF file.

r-hicontactsdata 1.12.0
Propagated dependencies: r-experimenthub@3.0.0 r-biocfilecache@3.0.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/js2264/HiContactsData
Licenses: Expat
Build system: r
Synopsis: HiContacts companion data package
Description:

This package provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

r-hgu133plus2barcodevecs 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2barcodevecs
Licenses: GPL 2+
Build system: r
Synopsis: hgu133plus2 data for barcode
Description:

Data used by the barcode package for microarrays of type hgu133plus2.

r-hgu95ccdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95ccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu95ccdf
Description:

This package provides a package containing an environment representing the HG_U95C.CDF file.

r-hthgu133bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hthgu133bcdf
Description:

This package provides a package containing an environment representing the HT_HG-U133B.cdf file.

r-harmonizedtcgadata 1.32.0
Propagated dependencies: r-experimenthub@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HarmonizedTCGAData
Licenses: GPL 3
Build system: r
Synopsis: Processed Harmonized TCGA Data of Five Selected Cancer Types
Description:

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

r-harmandata 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinformatics.csiro.au/harman/
Licenses: GPL 3
Build system: r
Synopsis: Data for the Harman package
Description:

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

r-hdxmsqc 1.6.0
Propagated dependencies: r-tidyr@1.3.1 r-spectra@1.20.0 r-s4vectors@0.48.0 r-qfeatures@1.20.0 r-mscoreutils@1.21.0 r-knitr@1.50 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-biocstyle@2.38.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/ococrook/hdxmsqc
Licenses: FSDG-compatible
Build system: r
Synopsis: An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Description:

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

r-hthgu133bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hthgu133b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_HG-U133B\_probe\_tab.

r-hgu133a2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133a2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133a2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_2\_probe\_tab.

r-hgu95ecdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95ecdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu95ecdf
Description:

This package provides a package containing an environment representing the HG_U95E.CDF file.

r-htmg430aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type htmg430a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430A\_probe\_tab.

r-highlyreplicatedrnaseq 1.22.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-experimenthub@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/const-ae/HighlyReplicatedRNASeq
Licenses: Expat
Build system: r
Synopsis: Collection of Bulk RNA-Seq Experiments With Many Replicates
Description:

Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.

r-htmg430acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htmg430acdf
Description:

This package provides a package containing an environment representing the HT_MG-430A.cdf file.

r-hicapture 1.0.0
Propagated dependencies: r-upsetr@1.4.0 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-s4vectors@0.48.0 r-memoise@2.0.1 r-iranges@2.44.0 r-interactionset@1.38.0 r-igraph@2.2.1 r-gplots@3.2.0 r-ggvenndiagram@1.5.4 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-genomicinteractions@1.44.0 r-genomeinfodb@1.46.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-cli@3.6.5 r-bsgenome@1.78.0 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/LaureTomas/HiCaptuRe
Licenses: GPL 3
Build system: r
Synopsis: HiCaptuRe: Manipulating and integrating Capture Hi-C data
Description:

Capture Hi-C is a set of techniques that enable the detection of genomic interactions involving regions of interest, known as baits. By focusing on selected loci, these approaches reduce sequencing costs while maintaining high resolution at the level of restriction fragments. HiCaptuRe provides tools to import, annotate, manipulate, and export Capture Hi-C data. The package accounts for the specific structure of bait–otherEnd interactions, facilitates integration with other omics datasets, and enables comparison across samples and conditions.

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Total results: 68658