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This package implements the routines to compare the survival curves with recurrent events, including the estimations of survival curves. The first model is a model for recurrent event, when the data are correlated or not correlated. It was proposed by Wang and Chang (1999) <doi:10.2307/2669690>. In the independent case, the survival function can be estimated by the generalization of the limit product model of Pena (2001) <doi:10.1198/016214501753381922>.
Runs several heterogeneity-robust difference-in-differences (DID) event-study estimators for non-absorbing (i.e., treatment can switch on and off over time, allowing treatment reversal) binary treatments through their respective packages, harmonizes their output onto a common time axis and tidy data structure, and overlays them in a single ggplot2 panel for visual comparison. Supported estimators include those provided by DIDmultiplegtDYN', PanelMatch', and fect', with an optional naive two-way fixed-effects reference series via fixest'. The underlying methods are respectively described in Clement de Chaisemartin and Xavier D'Haultfoeuille. "Difference-in-Differences Estimators of Intertemporal Treatment Effects." The Review of Economics and Statistics (2026) <doi:10.1162/rest_a_01414>, Kosuke Imai, In Song Kim, and Erik H. Wang. "Matching methods for causal inference with timeâ series crossâ sectional data." American Journal of Political Science 67.3 (2023) <doi:10.1111/ajps.12685>, Licheng Liu, Ye Wang, and Yiqing Xu. "A practical guide to counterfactual estimators for causal inference with timeâ series crossâ sectional data." American Journal of Political Science 68.1 (2024) <doi:10.1111/ajps.12723>, and Laurent R. Bergé, Kyle Butts, and Grant McDermott. "Fast and user-friendly econometrics estimations: The R package fixest'." arXiv preprint (2026) <doi:10.48550/arXiv.2601.21749>. A single nabs_event_study() wrapper runs any supported estimator with a common interface; nabs_event_study_simple() provides a one-line front door for quick exploratory runs; the S3 generic as_nabs_event_study() coerces estimator output into a tidy stable schema; and nabs_event_plot() overlays multiple methods on a single ggplot2 panel, with optional naive two-way fixed effects drawn in a neutral color as a reference.
NONMEM has been a tool for running nonlinear mixed effects models since the 80s and is still used today (Bauer 2019 <doi:10.1002/psp4.12404>). This tool allows you to convert NONMEM models to rxode2 (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) and with simple models nlmixr2 syntax (Fidler et al (2019) <doi:10.1002/psp4.12445>). The nlmixr2 syntax requires the residual specification to be included and it is not always translated. If available, the rxode2 model will read in the NONMEM data and compare the simulation for the population model ('PRED') individual model ('IPRED') and residual model ('IWRES') to immediately show how well the translation is performing. This saves the model development time for people who are creating an rxode2 model manually. Additionally, this package reads in all the information to allow simulation with uncertainty (that is the number of observations, the number of subjects, and the covariance matrix) with a rxode2 model. This is complementary to the babelmixr2 package that translates nlmixr2 models to NONMEM and can convert the objects converted from nonmem2rx to a full nlmixr2 fit.
Assists actuaries and other insurance modellers in pricing, reserving and capital modelling for non-life insurance and reinsurance modelling. Provides functions that help model excess levels, capping and pure Incurred but not reported claims (pure IBNR). Includes capped mean, exposure curves and increased limit factor curves (ILFs) for LogNormal, Gamma, Pareto, Sliced LogNormal-Pareto and Sliced Gamma-Pareto distributions. Includes mean, probability density function (pdf), cumulative probability function (cdf) and inverse cumulative probability function for Sliced LogNormal-Pareto and Sliced Gamma-Pareto distributions. Includes calculating pure IBNR exposure with LogNormal and Gamma distribution for reporting delay. Includes three shiny tools, one to simulate insurance claims applying reinsurance structures, fit generalised linear models and fit claims frequency or severity distributions. Methods used in the package refer to Free for All by Yiannis Parizas (2023) <https://www.theactuary.com/2023/03/02/free-all>; Escaping the triangle by Yiannis Parizas (2019) <https://www.theactuary.com/features/2019/06/2019/06/05/escaping-triangle>; Take to excess by Yiannis Parizas (2019) <https://www.theactuary.com/features/2019/03/2019/03/06/taken-excess>.
An implementation of some of the core network package functionality based on a simplified data structure that is faster in many research applications. This package is designed for back-end use in the statnet family of packages, including EpiModel'. Support is provided for binary and weighted, directed and undirected, bipartite and unipartite networks; no current support for multigraphs, hypergraphs, or loops.
This package provides bridge equations with optional autoregressive terms for nowcasting low-frequency macroeconomic variables (e.g. quarterly GDP) from higher-frequency indicators (e.g. monthly retail sales). Handles the ragged-edge problem where different indicators have different publication lags via mixed-frequency alignment. Includes pseudo-real-time evaluation with expanding or rolling windows, and the Diebold-Mariano test for comparing forecast accuracy following Harvey, Leybourne, and Newbold (1997) <doi:10.1016/S0169-2070(96)00719-4>. No API calls; designed to work with data from any source.
Package including an interactive Shiny application for testing normality visually.
An API client for NASA POWER global meteorology, surface solar energy and climatology data API. POWER (Prediction Of Worldwide Energy Resources) data are freely available for download with varying spatial resolutions dependent on the original data and with several temporal resolutions depending on the POWER parameter and community. This work is funded through the NASA Earth Science Directorate Applied Science Program. For more on the data themselves, the methodologies used in creating, a web-based data viewer and web access, please see <https://power.larc.nasa.gov/>.
Extends package nat (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.
This package implements statistical tools for analyzing, simulating, and computing properties of the New Topp-Leone Kumaraswamy Inverse Exponential (NTLKwIEx) distribution. See Atchadé M, Otodji T, and Djibril A (2024) <doi:10.1063/5.0179458> and Atchadé M, Otodji T, Djibril A, and N'bouké M (2023) <doi:10.1515/phys-2023-0151> for details.
Collapse, partition, combine, fill gaps in and expand date/time ranges.
This package provides functions for specifying and fitting nested dichotomy logistic regression models for a multi-category response and methods for summarising and plotting those models. Nested dichotomies are statistically independent, and hence provide an additive decomposition of tests for the overall polytomous response. When the dichotomies make sense substantively, this method can be a simpler alternative to the standard multinomial logistic model which compares response categories to a reference level. See: J. Fox (2016), "Applied Regression Analysis and Generalized Linear Models", 3rd Ed., ISBN 1452205663.
This package provides tools to generate Necklaces, Bracelets, Lyndon words and de Bruijn sequences. The generation relies on integer partitions and uses the KStatistics package. Methods used in the package refers to E. Di Nardo and G. Guarino (2022) <doi:10.48550/arXiv.2208.06855>.
This package provides a set of functions to simulate National Football League seasons including the sophisticated tie-breaking procedures.
nlmixr2 often has long runtimes. A pipeline toolkit tailored to nlmixr2 workflows leverages targets and nlmixr2 to ease reproducible workflows. nlmixr2targets ensures minimal rework in model development with nlmixr2 and targets by simplifying and standardizing models and datasets.
This package provides a set of convenience functions as well as geographical/political data about Nigeria, aimed at simplifying work with data and information that are specific to the country.
This package provides a number of statistical tests have been proposed to compare two survival curves, including the difference in (or ratio of) t-year survival, difference in (or ratio of) p-th percentile survival, difference in (or ratio of) restricted mean survival time, and the weighted log-rank test. Despite the multitude of options, the convention in survival studies is to assume proportional hazards and to use the unweighted log-rank test for design and analysis. This package provides sample size and power calculation for all of the above statistical tests with allowance for flexible accrual, censoring, and survival (eg. Weibull, piecewise-exponential, mixture cure). It is the companion R package to the paper by Yung and Liu (2020) <doi:10.1111/biom.13196>. Specific to the weighted log-rank test, users may specify which approximations they wish to use to estimate the large-sample mean and variance. The default option has been shown to provide substantial improvement over the conventional sample size and power equations based on Schoenfeld (1981) <doi:10.1093/biomet/68.1.316>.
Nonparametric smoothing methods for density and regression estimation and inference with circular data. The package provides kernel density estimation along with inferential tools such as circular SiZer for feature significance, mode estimation, and modal clustering. It includes multiple methods for selecting the smoothing parameter, allowing users to optimize the trade-off between bias and variance. Various plotting functions help visualize estimated densities, modes, clusters, and significance features. For regression, the package implements nonparametric estimation of the mean regression function as well as other conditional characteristics, including modal regression and generalized regression. Bandwidth selection is also supported in the regression context, and testing procedures are available to assess structural features or effects in circular regression models.
Posterior sampling in several commonly used distributions using normalized power prior as described in Duan, Ye and Smith (2006) <doi:10.1002/env.752> and Ibrahim et.al. (2015) <doi:10.1002/sim.6728>. Sampling of the power parameter is achieved via either independence Metropolis-Hastings or random walk Metropolis-Hastings based on transformation.
This package provides utility functions, distributions, and fitting methods for Bayesian Spatial Capture-Recapture (SCR) and Open Population Spatial Capture-Recapture (OPSCR) modelling using the nimble package (de Valpine et al. 2017 <doi:10.1080/10618600.2016.1172487 >). Development of the package was motivated primarily by the need for flexible and efficient analysis of large-scale SCR data (Bischof et al. 2020 <doi:10.1073/pnas.2011383117 >). Computational methods and techniques implemented in nimbleSCR include those discussed in Turek et al. 2021 <doi:10.1002/ecs2.3385>; among others. For a recent application of nimbleSCR, see Milleret et al. (2021) <doi:10.1098/rsbl.2021.0128>.
Routines for enumerating all existing nonnegative integer solutions of a linear Diophantine equation. The package provides routines for solving 0-1, bounded and unbounded knapsack problems; 0-1, bounded and unbounded subset sum problems; additive partitioning of natural numbers; and one-dimensional bin-packing problem.
Design and analysis of flexible platform trials with non-concurrent controls. Functions for data generation, analysis, visualization and running simulation studies are provided. The implemented analysis methods are described in: Bofill Roig et al. (2022) <doi:10.1186/s12874-022-01683-w>, Saville et al. (2022) <doi:10.1177/17407745221112013> and Schmidli et al. (2014) <doi:10.1111/biom.12242>.
An implementation of the National Information Platforms for Nutrition or NiPN's analytic methods for assessing quality of anthropometric datasets that include measurements of weight, height or length, middle upper arm circumference, sex and age. The focus is on anthropometric status but many of the presented methods could be applied to other variables.
Conduct a noncompartmental analysis with industrial strength. Some features are 1) CDISC SDTM terms 2) Automatic or manual slope selection 3) Supporting both linear-up linear-down and linear-up log-down method 4) Interval(partial) AUCs with linear or log interpolation method 5) Produce pdf, rtf, text report files. * Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).