globus-cli provides a command-line interface to Globus APIs.

python-globus-sdk provides a convenient Pythonic interface to Globus APIs.

GeneNetwork proxy manages authorization/access control

Gnulib is a central location for common GNU code, intended to be shared among GNU packages.

Genenetwork monitoring tool

guile-dbi is a library for Guile that provides a convenient interface to SQL databases. Database programming with guile-dbi is generic in that the same programming interface is presented regardless of which database system is used. It currently supports MySQL, Postgres and SQLite3.

guile-dbi is a library for Guile that provides a convenient interface to SQL databases. This package implements the interface for MySQL.

Use of guile.

Helm is a tool for managing Kubernetes charts. Charts are packages of pre-configured Kubernetes resources. Use Helm to:

1. Find and use popular software packaged as Helm charts to run in Kubernetes

2. Share your own applications as Helm charts

3. Create reproducible builds of your Kubernetes applications

4. Intelligently manage your Kubernetes manifest files

5. Manage releases of Helm packages

HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface (MPI)) and it can be compiled as a shared library and called from other programming environments such as Python and R.

The Jakarta-ORO Java classes are a set of text-processing Java classes that provide Perl5 compatible regular expressions, AWK-like regular expressions, glob expressions, and utility classes for performing substitutions, splits, filtering filenames, etc.

Commons VFS provides a single API for accessing various different file systems. It presents a uniform view of the files from various different sources, such as the files on local disk, on an HTTP server, or inside a Zip archive.

This aims to be a complete implementation of XZ data compression in pure Java. Single-threaded streamed compression and decompression and random access decompression have been fully implemented.

Apache Ivy is a popular dependency manager focusing on flexibility and simplicity.

JSch is a pure Java implementation of SSH2. JSch allows you to connect to an sshd server and use port forwarding, X11 forwarding, file transfer, etc., and you can integrate its functionality into your own Java programs.

Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.

RTG Tools is a subset of RTG Core that includes several useful utilities for dealing with VCF files and sequence data. Probably the most interesting is the vcfeval command which performs sophisticated comparison of VCF files.

This project is an attempt to build re-usable charts and chart components for d3.js without taking away the power that d3.js gives you. This is a very young collection of components, with the goal of keeping these components very customizable, staying away from your standard cookie cutter solutions.

These plug-ins are feature enhancing for the DataTables library, adding extra options to core functionality such as additional sort algorithms, API methods and pagination controls. The plug-ins should not be confused with DataTables 'extensions' which are more significant software libraries which add additional features to DataTables.

A Cytoscape.js extension to export the current graph view as an SVG.

Popper.js allows you to dynamically align a div, e.g. a tooltip, to another element in the page. This extension allows you to use Popper.js on Cytoscape elements. This allows you to create DOM elements positioned on or around Cytoscape elements. It is useful for tooltips and overlays, for example.

chroma.js is a small-ish zero-dependency JavaScript library for all kinds of color conversions and color scales. chroma.js can also help you generate nice colors using various methods, for instance to be used in color palette for maps or data visualization.

D3.js is a JavaScript library for manipulating documents based on data. D3 helps you bring data to life using HTML, SVG, and CSS. D3's emphasis on web standards gives you the full capabilities of modern browsers without tying yourself to a proprietary framework, combining powerful visualization components and a data-driven approach to DOM manipulation.