Assists in the TOPSIS analysis process, designed to return at the end of the answer of the TOPSIS multicriteria analysis, a ranking table with the best option as the analysis proposes. TOPSIS is basically a technique developed by Hwang and Yoon in 1981, starting from the point that the best alternative should be closest to the positive ideal solution and farthest from the negative one, based on several criteria to result in the best benefit. (LIU, H. et al., 2019) <doi:10.1016/j.agwat.2019.105787>.

STARMA (Space-Time Autoregressive Moving Average) models are commonly utilized in modeling and forecasting spatiotemporal time series data. However, the intricate nonlinear dynamics observed in many space-time rainfall patterns often exceed the capabilities of conventional STARMA models. This R package enables the fitting of Time Delay Spatio-Temporal Neural Networks, which are adept at handling such complex nonlinear dynamics efficiently. For detailed methodology, please refer to Saha et al. (2020) <doi:10.1007/s00704-020-03374-2>.

This package provides a Text mining toolkit for Chinese, which includes facilities for Chinese string processing, Chinese NLP supporting, encoding detecting and converting. Moreover, it provides some functions to support tm package in Chinese.

This package provides functions for compounding and discounting calculations included here serve as a complete reference for various scenarios of time value of money. Raymond M. Brooks (â Financial Management,â 2018, ISBN: 9780134730417). Sheridan Titman, Arthur J. Keown, John D. Martin (â Financial Management: Principles and Applications,â 2017, ISBN: 9780134417219). Jonathan Berk, Peter DeMarzo, David Stangeland, Andras Marosi (â Fundamentals of Corporate Finance,â 2019, ISBN: 9780134735313). S. A. Hummelbrunner, Kelly Halliday, Ali R. Hassanlou (â Contemporary Business Mathematics with Canadian Applications,â 2020, ISBN: 9780135285015).

Deconvolving thermoluminescence glow curves according to various kinetic models (first-order, second-order, general-order, and mixed-order) using a modified Levenberg-Marquardt algorithm (More, 1978) <DOI:10.1007/BFb0067700>. It provides the possibility of setting constraints or fixing any of parameters. It offers an interactive way to initialize parameters by clicking with a mouse on a plot at positions where peak maxima should be located. The optimal estimate is obtained by "trial-and-error". It also provides routines for simulating first-order, second-order, and general-order glow peaks.

This package implements an algorithm for variable selection in high-dimensional linear regression using the "tilted correlation", a new way of measuring the contribution of each variable to the response which takes into account high correlations among the variables in a data-driven way.

This package infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.

An efficient implementation of the TreeSHAP algorithm introduced by Lundberg et al., (2020) <doi:10.1038/s42256-019-0138-9>. It is capable of calculating SHAP (SHapley Additive exPlanations) values for tree-based models in polynomial time. Currently supported models include gbm', randomForest', ranger', xgboost', lightgbm'.

The Gene Expression Omnibus (<https://www.ncbi.nlm.nih.gov/geo/>) and The Cancer Genome Atlas (<https://portal.gdc.cancer.gov/>) are widely used medical public databases. Our platform integrates routine analysis and visualization tools for expression data to provide concise and intuitive data analysis and presentation.

Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented. Details can be found in Leifeld (2013), JStatSoft <doi:10.18637/jss.v055.i08>.).

Probability mass (d), distribution (p), quantile (q), and random number generating (r and rt) functions for the time-varying right-truncated geometric (tvgeom) distribution. Also provided are functions to calculate the first and second central moments of the distribution. The tvgeom distribution is similar to the geometric distribution, but the probability of success is allowed to vary at each time step, and there are a limited number of trials. This distribution is essentially a Markov chain, and it is useful for modeling Markov chain systems with a set number of time steps.

Solve optimal transport problems. Compute Wasserstein distances (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p distances), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.

This package creates some tables of clinical study. Table 1 is created by table1() to describe baseline characteristics, which is essential in every clinical study. Created by table2(), the function of Table 2 is to explore influence factors. And Table 3 created by table3() is able to make stratified analysis.

Computing diversity measures on tripartite graphs. This package first implements a parametrized family of such diversity measures which apply on probability distributions. Sometimes called "True Diversity", this family contains famous measures such as the richness, the Shannon entropy, the Herfindahl-Hirschman index, and the Berger-Parker index. Second, the package allows to apply these measures on probability distributions resulting from random walks between the levels of tripartite graphs. By defining an initial distribution at a given level of the graph and a path to follow between the three levels, the probability of the walker's position within the final level is then computed, thus providing a particular instance of diversity to measure.

The tcplfit2 R package performs basic concentration-response curve fitting. The original tcplFit() function in the tcpl R package performed basic concentration-response curvefitting to 3 models. With tcplfit2, the core tcpl concentration-response functionality has been expanded to process diverse high-throughput screen (HTS) data generated at the US Environmental Protection Agency, including targeted ToxCast, high-throughput transcriptomics (HTTr) and high-throughput phenotypic profiling (HTPP). tcplfit2 can be used independently to support analysis for diverse chemical screening efforts.

This package provides functions that provide point and interval estimations of optimum thresholds for continuous diagnostic tests. The methodology used is based on minimizing an overall cost function in the two- and three-state settings. We also provide functions for sample size determination and estimation of diagnostic accuracy measures. We also include graphical tools. The statistical methodology used here can be found in Perez-Jaume et al (2017) <doi:10.18637/jss.v082.i04> and in Skaltsa et al (2010, 2012) <doi:10.1002/bimj.200900294>, <doi:10.1002/sim.4369>.

Parsing (R)Markdown files with numerous regular expressions can be fraught with peril, but it does not have to be this way. Converting (R)Markdown files to XML using the commonmark package allows in-memory editing via of markdown elements via XPath through the extensible R6 class called yarn'. These modified XML representations can be written to (R)Markdown documents via an xslt stylesheet which implements an extended version of GitHub'-flavoured markdown so that you can tinker to your hearts content.

Generic methods for parameter tuning of classification algorithms using multiple scoring functions (Muessel et al. (2012), <doi:10.18637/jss.v046.i05>).

This package provides functions to access the database of 217 data-frames with aggregate study-level characteristics (that may act as effect modifiers) extracted from published systematic reviews with network meta-analysis. The database shall only be used for developing and appraising the methodology to assess the transitivity assumption quantitatively.

Turing Geovisualization Engine R package for geospatial visualization and analysis.

Includes functions for mapping named lists to function arguments, random strings, pasting and combining rows together across columns, etc.

Converts text into speech using various text-to-speech (TTS) engines and provides an unified interface for accessing their functionality. With this package, users can easily generate audio files of spoken words, phrases, or sentences from plain text data. The package supports multiple TTS engines, including Google's Cloud Text-to-Speech API', Amazon Polly', Microsoft's Cognitive Services Text to Speech REST API', and a free TTS engine called Coqui TTS'.

This package provides tools for computing various vector summaries of persistence diagrams studied in Topological Data Analysis. For improved computational efficiency, all code for the vector summaries is written in C++ using the Rcpp and RcppArmadillo packages.

Download geographic shapes from the United States Census Bureau TIGER/Line Shapefiles <https://www.census.gov/geographies/mapping-files/time-series/geo/tiger-line-file.html>. Functions support downloading and reading in geographic boundary data. All downloads can be set up with a cache to avoid multiple downloads. Data is available back to 2000 for most geographies.