_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


hiddendomains 3.1
Dependencies: perl@5.36.0
Propagated dependencies: r-depmixs4@1.5-1 r-hiddenmarkov@1.8-14
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: http://hiddendomains.sourceforge.net
Licenses: GPL 2
Synopsis: Programs used to identify enrichment of ChIP-seq reads
Description:

hiddenDomains is a suite of programs used to identify significant enrichment of ChIP-seq reads that span large domains, like HK27me3. The input data can be in BAM format, or in a tab-delimited 'reads per bin' format described below. The output is a BED formatted file the lists the enriched domains and their posterior probabilities.

python-pydeseq2 0.5.2
Propagated dependencies: python-anndata@0.11.4 python-formulaic@1.0.1 python-formulaic-contrasts@1.0.0 python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/owkin/PyDESeq2
Licenses: Expat
Synopsis: Python implementation of DESeq2
Description:

This package provides a python implementation of DESeq2.

primer3 1.1.4
Dependencies: perl@5.36.0
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/primer3-org/primer3
Licenses: GPL 2
Synopsis: Tool to design PCR primers
Description:

Design PCR primers from DNA sequence. From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it.

r-scriabin 0.0.0.9000-1.313d15e
Propagated dependencies: r-ade4@1.7-23 r-cellid@1.16.0 r-circlize@0.4.16 r-clipr@0.8.0 r-complexheatmap@2.24.0 r-complexheatmap@2.24.0 r-cowplot@1.1.3 r-dplyr@1.1.4 r-factoextra@1.0.7 r-fsa@0.10.0 r-genefilter@1.90.0 r-ggalluvial@0.12.5 r-ggfittext@0.10.2 r-ggplot2@3.5.2 r-ggsci@3.2.0 r-limma@3.64.1 r-magrittr@2.0.3 r-matrix@1.7-3 r-matrixstats@1.5.0 r-networkd3@0.4.1 r-nichenetr@2.0.4 r-pbapply@1.7-2 r-qlcmatrix@0.9.8 r-scales@1.4.0 r-scater@1.36.0 r-seurat@5.3.0 r-tibble@3.2.1 r-tidyft@0.9.20 r-wgcna@1.73
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/BlishLab/scriabin
Licenses: Expat
Synopsis: Single-cell resolved interaction analysis through binning
Description:

Scriabin aims to provide a comprehensive view of cell-cell communication (CCC). It achieves this without requiring subsampling or aggregation.

python-pydoe3 1.0.4
Propagated dependencies: python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/carputils.scm (guix-science packages carputils)
Home page: https://github.com/relf/pyDOE3
Licenses: Modified BSD
Synopsis: Design of experiments for Python
Description:

This package is designed to help the scientist, engineer, statistician, etc., to construct appropriate experimental designs.

python-common 0.1.2
Channel: guix-science
Location: guix-science/packages/carputils.scm (guix-science packages carputils)
Home page: https://pypi.org/project/common
Licenses: Expat
Synopsis: Common tools and data structures implemented in pure Python
Description:

This package is designed to help the scientist, engineer, statistician, etc., to construct appropriate experimental designs.

python-carputils 0.1
Propagated dependencies: python-numpy@1.26.4 python-ruamel.yaml@0.18.14 python-common@0.1.2 python-pydoe3@1.0.4 python-tables@3.10.2 python-scipy@1.12.0 python-matplotlib@3.8.2 python-pandas@2.2.3 python-six@1.17.0 python-dateutil@2.9.0
Channel: guix-science
Location: guix-science/packages/carputils.scm (guix-science packages carputils)
Home page: https://opencarp.org/about/opencarp-ecosystem#the-carputils-framework
Licenses: ASL 2.0
Synopsis: Python framework for access to openCARP
Description:

The carputils framework will be the optimal way to access openCARP for most users. This Python framework was developed to provide the means to easily encode in silico experiments including pre- and postprocessing. carputils will call the openCARP simulator.

libxc 5.1.5
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://libxc.gitlab.io
Licenses: MPL 2.0
Synopsis: Library of exchange-correlation functionals for density-functional theory
Description:

libxc, a library of exchange-correlation functionals for density-functional theory, aims to provide a portable, well tested and reliable set of exchange and correlation functionals that can be used by a variety of programs.

plumed 2.10.0
Dependencies: fftw@3.3.10 gsl@2.8 openmpi@4.1.6 openblas@0.3.30 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://www.plumed.org/
Licenses: LGPL 3+
Synopsis: The community-developed PLUgin for MolEcular Dynamics
Description:

PLUMED is a library that provides a wide range of different methods, which include: enhanced-sampling algorithms, free-energy methods, tools to analyze the vast amounts of data produced by molecular dynamics (MD) simulations. These techniques can be used in combination with a large toolbox of collective variables that describe complex processes in physics, chemistry, material science, and biology.

wannier90 3.1.0
Dependencies: gfortran@14.3.0 lapack@3.12.1 perl@5.36.0 python-wrapper@3.11.11
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://wannier.org/
Licenses: GPL 2+
Synopsis: Generate maximally-localized Wannier functions
Description:

Wannier90 is a code for generating maximally-localized Wannier functions and using them to compute advanced electronic properties of materials with high efficiency and accuracy. Many electronic structure codes have an interface to Wannier90, and there are several post-processing codes that use the output of Wannier90 for further analysis and calculation.

python-spglib 2.6.0
Propagated dependencies: python-importlib-resources@6.5.2 python-numpy@1.26.4 python-typing-extensions@4.15.0
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://spglib.readthedocs.io/
Licenses: Modified BSD
Synopsis: Python bindings for the spglib library
Description:

This package provides Python bindings for the spglib library, used for crystal symmetry search.

quantum-espresso 7.3
Dependencies: device-xlib@0.2.0-1.08558f7 fftw@3.3.10 hdf5-parallel-openmpi@1.14.6 scalapack@2.2.2 libmbd@0.12.8 libxc@5.1.5 openblas@0.3.30 openmpi@4.1.6 wannier90@3.1.0
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://www.quantum-espresso.org/
Licenses: GPL 2+
Synopsis: Electronic-structure calculations and materials modeling at the nanoscale
Description:

Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials.

python-plumed 2.10.0
Dependencies: plumed@2.10.0
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://www.plumed.org/
Licenses: LGPL 3+
Synopsis: Python interface to PLUMED
Description:

PLUMED is a library that provides a wide range of different methods, which include: enhanced-sampling algorithms, free-energy methods, tools to analyze the vast amounts of data produced by molecular dynamics (MD) simulations. These techniques can be used in combination with a large toolbox of collective variables that describe complex processes in physics, chemistry, material science, and biology.

python-seekpath 2.1.0
Propagated dependencies: python-numpy@1.26.4 python-scipy@1.12.0 python-spglib@2.6.0
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://github.com/giovannipizzi/seekpath
Licenses: Expat
Synopsis: Process k-vector coefficients and band paths in crystal structures
Description:

This package provides a module to obtain and visualize k-vector coefficients and obtain band paths in the Brillouin zone of crystal structures.

libmbd 0.12.8
Dependencies: openblas@0.3.30 openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/chemistry.scm (guix-science packages chemistry)
Home page: https://github.com/libmbd/libmbd
Licenses: MPL 2.0
Synopsis: Many-body dispersion (MBD) method implementation
Description:

libMBD implements the many-body dispersion (MBD) method in several programming languages and frameworks (Fortran, C, Python C bindings, Python/Numpy, Python/Tensorflow).

pdiplugin-decl-hdf5 1.9.2
Dependencies: spdlog@1.13.0 libyaml@0.2.5 pkg-config@0.29.2 paraconf@1.0.0 hdf5@1.14.6
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://pdi.dev
Licenses: Modified BSD
Synopsis: Serial version of the HDF5 plugin for PDI
Description:

Decl'HDF5 plugin enables one to read and write data from HDF5 files in a declarative way. Decl'HDF5 does not support the full HDF5 feature set but offers a simple declarative interface to access a large subset of it for the PDI library.

pdiplugin-decl-netcdf-parallel 1.9.2
Dependencies: spdlog@1.13.0 libyaml@0.2.5 pkg-config@0.29.2 paraconf@1.0.0 hdf5-parallel-openmpi@1.14.6 netcdf-parallel-openmpi@4.9.0 openmpi@4.1.6
Propagated dependencies: pdiplugin-mpi@1.9.2
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://pdi.dev
Licenses: Modified BSD
Synopsis: Parallel version of the NetCDF plugin for PDI
Description:

PDI supports loose coupling of simulation codes with data handling the simulation code is annotated in a library-agnostic way, libraries are used from the specification tree.

ddc 0.9.0
Dependencies: fftw@3.3.10 fftwf@3.3.10 ginkgo-hpc@1.10.0 kokkos@4.6.02 kokkos-fft@0.3.0 kokkos-kernels@4.6.02 libyaml@0.2.5 openblas@0.3.30 paraconf@1.0.0 pdi@1.9.2 pdiplugin-user-code@1.9.2
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://ddc.mdls.fr/
Licenses: Expat
Synopsis: The discrete domain computation library (DDC)
Description:

DDC, is a C++-17 library that aims to offer to the C++/MPI world an equivalent to the xarray.DataArray/dask.Array python environment. Where these two libraries are based on numpy, DDC relies on Kokkos and mdspan to offer CPU/GPU performance-portable multi-dimensional arrays and iterators.

pdi+python 1.9.2
Dependencies: spdlog@1.13.0 libyaml@0.2.5 pkg-config@0.29.2 paraconf@1.0.0 python@3.11.11 pybind11@2.13.6
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://pdi.dev
Licenses: Modified BSD
Synopsis: PDI package with Python support
Description:

PDI supports loose coupling of simulation codes with data handling the simulation code is annotated in a library-agnostic way, libraries are used from the specification tree.

pdi 1.9.2
Dependencies: spdlog@1.13.0 libyaml@0.2.5 pkg-config@0.29.2 paraconf@1.0.0
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://pdi.dev
Licenses: Modified BSD
Synopsis: Library allowing loose coupling between components
Description:

PDI supports loose coupling of simulation codes with data handling the simulation code is annotated in a library-agnostic way, libraries are used from the specification tree.

pdiplugin-mpi 1.9.2
Dependencies: spdlog@1.13.0 libyaml@0.2.5 pkg-config@0.29.2 paraconf@1.0.0 openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://pdi.dev
Licenses: Modified BSD
Synopsis: MPI plugin for PDI
Description:

PDI supports loose coupling of simulation codes with data handling the simulation code is annotated in a library-agnostic way, libraries are used from the specification tree.

mdspan 0.6.0
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://github.com/kokkos/mdspan
Licenses: ASL 2.0
Synopsis: Reference implementation of mdspan targeting C++23
Description:

This package aims to provide a production-quality implementation of the ISO-C++ proposal P0009, which will add support for non-owning multi-dimensional array references to the C++ standard library.

pdiplugin-pycall 1.9.2
Dependencies: spdlog@1.13.0 libyaml@0.2.5 pkg-config@0.29.2 paraconf@1.0.0 python@3.11.11 pybind11@2.13.6
Channel: guix-science
Location: guix-science/packages/cpp.scm (guix-science packages cpp)
Home page: https://pdi.dev
Licenses: Modified BSD
Synopsis: Pycall plugin for PDI
Description:

PDI supports loose coupling of simulation codes with data handling the simulation code is annotated in a library-agnostic way, libraries are used from the specification tree.

Page: 12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879808182838485868788899091929394959697989910010110210310410510610710810911011111211311411511611711811912012112212312412512612712812913013113213313413513613713813914014114214314414514614714814915015115215315415515615715815916016116216316416516616716816917017117217317417517617717817918018118218318418518618718818919019119219319419519619719819920020120220320420520620720820921021121221321421521621721821922022122222322422522622722822923023123223323423523623723823924024124224324424524624724824925025125225325425525625725825926026126226326426526626726826927027127227327427527627727827928028128228328428528628728828929029129229329429529629729829930030130230330430530630730830931031131231331431531631731831932032132232332432532632732832933033133233333433533633733833934034134234334434534634734834935035135235335435535635735835936036136236336436536636736836937037137237337437537637737837938038138238338438538638738838939039139239339439539639739839940040140240340440540640740840941041141241341441541641741841942042142242342442542642742842943043143243343443543643743843944044144244344444544644744844945045145245345445545645745845946046146246346446546646746846947047147247347447547647747847948048148248348448548648748848949049149249349449549649749849950050150250350450550650750850951051151251351451551651751851952052152252352452552652752852953053153253353453553653753853954054154254354454554654754854955055155255355455555655755855956056156256356456556656756856957057157257357457557657757857958058158258358458558658758858959059159259359459559659759859960060160260360460560660760860961061161261361461561661761861962062162262362462562662762862963063163263363463563663763863964064164264364464564664764864965065165265365465565665765865966066166266366466566666766866967067167267367467567667767867968068168268368468568668768868969069169269369469569669769869970070170270370470570670770870971071171271371471571671771871972072172272372472572672772872973073173273373473573673773873974074174274374474574674774874975075175275375475575675775875976076176276376476576676776876977077177277377477577677777877978078178278378478578678778878979079179279379479579679779879980080180280380480580680780880981081181281381481581681781881982082182282382482582682782882983083183283383483583683783883984084184284384484584684784884985085185285385485585685785885986086186286386486586686786886987087187287387487587687787887988088188288388488588688788888989089189289389489589689789889990090190290390490590690790890991091191291391491591691791891992092192292392492592692792892993093193293393493593693793893994094194294394494594694794894995095195295395495595695795895996096196296396496596696796896997097197297397497597697797897998098198298398498598698798898999099199299399499599699799899910001001100210031004100510061007100810091010101110121013101410151016101710181019102010211022102310241025102610271028102910301031103210331034103510361037103810391040104110421043104410451046104710481049105010511052105310541055105610571058105910601061106210631064106510661067106810691070107110721073107410751076107710781079108010811082108310841085108610871088108910901091109210931094109510961097109810991100110111021103110411051106110711081109111011111112111311141115111611171118111911201121112211231124112511261127112811291130113111321133113411351136113711381139114011411142114311441145114611471148114911501151115211531154115511561157115811591160116111621163116411651166116711681169117011711172117311741175117611771178117911801181118211831184118511861187118811891190119111921193119411951196119711981199120012011202120312041205120612071208120912101211121212131214121512161217121812191220122112221223122412251226122712281229123012311232123312341235123612371238123912401241124212431244124512461247124812491250125112521253125412551256125712581259126012611262126312641265126612671268126912701271127212731274127512761277127812791280128112821283128412851286128712881289129012911292129312941295129612971298129913001301130213031304130513061307130813091310131113121313131413151316131713181319132013211322132313241325132613271328132913301331133213331334133513361337133813391340134113421343134413451346134713481349135013511352135313541355135613571358135913601361136213631364136513661367136813691370137113721373137413751376137713781379138013811382138313841385138613871388138913901391139213931394139513961397139813991400140114021403140414051406140714081409141014111412141314141415141614171418141914201421142214231424142514261427142814291430143114321433143414351436143714381439144014411442144314441445144614471448144914501451145214531454145514561457145814591460146114621463146414651466146714681469147014711472147314741475147614771478147914801481148214831484148514861487148814891490149114921493149414951496149714981499150015011502150315041505150615071508150915101511151215131514151515161517151815191520152115221523152415251526152715281529153015311532153315341535153615371538153915401541154215431544154515461547154815491550155115521553155415551556155715581559156015611562156315641565156615671568156915701571157215731574157515761577157815791580158115821583158415851586158715881589159015911592159315941595159615971598159916001601160216031604160516061607160816091610161116121613161416151616161716181619162016211622162316241625162616271628162916301631163216331634163516361637163816391640164116421643164416451646164716481649165016511652165316541655165616571658165916601661166216631664166516661667166816691670167116721673167416751676167716781679168016811682168316841685168616871688168916901691169216931694169516961697169816991700170117021703170417051706170717081709171017111712171317141715171617171718171917201721172217231724172517261727172817291730173117321733173417351736173717381739174017411742174317441745174617471748174917501751175217531754175517561757175817591760176117621763176417651766176717681769177017711772177317741775177617771778177917801781178217831784178517861787178817891790179117921793179417951796179717981799180018011802180318041805180618071808180918101811181218131814181518161817181818191820182118221823182418251826182718281829183018311832183318341835183618371838183918401841184218431844184518461847184818491850185118521853185418551856185718581859186018611862186318641865186618671868186918701871187218731874187518761877187818791880
Total results: 45109