Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800) assembled using data from public repositories.

This package provides a package containing an environment representing the Hu35KsubD.CDF file.

Package with metadata for genotyping Illumina Omni Express 12 arrays using the crlmm package.

This package provides a package containing an environment representing the HT_MG-430A.cdf file.

This package provides a package containing an environment representing the Hu35KsubA.CDF file.

This package was created by frmaTools version 1.9.2.

This package provides a package containing an environment representing the HT_Rat-Focus.cdf file.

This is an ExperimentHub Data package that helps to access the spatially-resolved transcriptomics and single-nucleus RNA sequencing data. The datasets are generated from adjacent tissue sections of the anterior human hippocampus across ten adult neurotypical donors. The datasets are based on [spatial_hpc](https://github.com/LieberInstitute/spatial_hpc) project by Lieber Institute for Brain Development (LIBD) researchers and collaborators.

This package provides a package containing an environment representing the Hu6800subC.CDF file.

This package provides a package for detecting differential methylation. It exploits a Bayesian hidden Markov model that incorporates location dependence among genomic loci, unlike most existing methods that assume independence among observations. Bayesian priors are applied to permit information sharing across an entire chromosome for improved power of detection. The direct output of our software package is the best sequence of methylation states, eliminating the use of a subjective, and most of the time an arbitrary, threshold of p-value for determining significance. At last, our methodology does not require replication in either or both of the two comparison groups.

This package provides a package containing an environment representing the HG-U219.cdf file.

Capture Hi-C is a set of techniques that enable the detection of genomic interactions involving regions of interest, known as baits. By focusing on selected loci, these approaches reduce sequencing costs while maintaining high resolution at the level of restriction fragments. HiCaptuRe provides tools to import, annotate, manipulate, and export Capture Hi-C data. The package accounts for the specific structure of bait–otherEnd interactions, facilitates integration with other omics datasets, and enables comparison across samples and conditions.

This package provides access to the scRNA-seq, scATAC-seq, multiome, CITE-seq and spatial transcriptomics (Visium) data generated by the tonsil cell atlas in the context of the Human Cell Atlas (HCA). The data is provided via the Bioconductor project in the form of SingleCellExperiments. Additionally, information on the whole compendium of identified cell types is provided in form of a glossary.

This package provides a package containing an environment representing the HC_G110.cdf file.

This package provides a package containing an environment representing the HT_MG-430B.cdf file.

Package with metadata for genotyping Illumina Omni5 Quad arrays using the crlmm package.

This package was created by frmaTools version 1.13.0.

Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) assembled using data from public repositories.

This package contains the data used in the vignettes and examples of the h5vc package.

Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) assembled using data from public repositories.

Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories.

This package provides a package containing an environment representing the HG-U133A.cdf file.

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba) assembled using data from public repositories.