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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-ciperm 0.2.3
Propagated dependencies: r-matrixstats@1.5.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/ColbyStatSvyRsch/CIPerm/
Licenses: Expat
Build system: r
Synopsis: Computationally-Efficient Confidence Intervals for Mean Shift from Permutation Methods
Description:

This package implements computationally-efficient construction of confidence intervals from permutation or randomization tests for simple differences in means, based on Nguyen (2009) <doi:10.15760/etd.7798>.

r-crosshap 1.4.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-scales@1.4.0 r-rlang@1.1.6 r-patchwork@1.3.2 r-magrittr@2.0.4 r-gtable@0.3.6 r-gridextra@2.3 r-ggpp@0.5.9 r-ggplot2@4.0.1 r-ggdist@3.3.3 r-dplyr@1.1.4 r-dbscan@1.2.3 r-data-table@1.17.8 r-clustree@0.5.1 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://jacobimarsh.github.io/crosshap/
Licenses: Expat
Build system: r
Synopsis: Local Haplotype Clustering and Visualization
Description:

This package provides a local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. crosshap enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.

r-certara-rdarwin 1.2.0
Propagated dependencies: r-ssh@0.9.4 r-magrittr@2.0.4 r-jsonlite@2.0.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://certara.github.io/R-Darwin/
Licenses: LGPL 3
Build system: r
Synopsis: Interface for 'pyDarwin' Machine Learning Pharmacometric Model Development
Description:

Utilities that support the usage of pyDarwin (<https://certara.github.io/pyDarwin/>) for ease of setup and execution of a machine learning based pharmacometric model search with Certara's Non-Linear Mixed Effects (NLME) modeling engine.

r-climenu 0.1.7
Propagated dependencies: r-keypress@1.3.1 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/PetrCala/climenu
Licenses: Expat
Build system: r
Synopsis: Interactive Command-Line Menus
Description:

This package provides interactive command-line menu functionality with single and multiple selection menus, keyboard navigation (arrow keys or vi-style j/k), preselection, and graceful fallback for non-interactive environments. Inspired by tools such as inquirer.js <https://github.com/SBoudrias/Inquirer.js>, pick <https://github.com/aisk/pick>, and survey <https://github.com/AlecAivazis/survey>. Designed to be lightweight and easy to integrate into R packages and scripts.

r-cmf 1.0.3
Propagated dependencies: r-cpp11@0.5.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CMF
Licenses: GPL 2+
Build system: r
Synopsis: Collective Matrix Factorization
Description:

Collective matrix factorization (CMF) finds joint low-rank representations for a collection of matrices with shared row or column entities. This code learns a variational Bayesian approximation for CMF, supporting multiple likelihood potentials and missing data, while identifying both factors shared by multiple matrices and factors private for each matrix. For further details on the method see Klami et al. (2014) <arXiv:1312.5921>. The package can also be used to learn Bayesian canonical correlation analysis (CCA) and group factor analysis (GFA) models, both of which are special cases of CMF. This is likely to be useful for people looking for CCA and GFA solutions supporting missing data and non-Gaussian likelihoods. See Klami et al. (2013) <https://research.cs.aalto.fi/pml/online-papers/klami13a.pdf> and Virtanen et al. (2012) <http://proceedings.mlr.press/v22/virtanen12.html> for details on Bayesian CCA and GFA, respectively.

r-condmvnorm 2025.1
Propagated dependencies: r-mvtnorm@1.3-3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=condMVNorm
Licenses: GPL 2
Build system: r
Synopsis: Conditional Multivariate Normal Distribution
Description:

Computes conditional multivariate normal densities, probabilities, and random deviates.

r-calmate 0.13.0
Propagated dependencies: r-r-utils@2.13.0 r-r-oo@1.27.1 r-r-methodss3@1.8.2 r-r-filesets@2.15.1 r-matrixstats@1.5.0 r-mass@7.3-65 r-aroma-core@3.3.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/HenrikBengtsson/calmate/
Licenses: LGPL 2.1+
Build system: r
Synopsis: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Description:

The CalMaTe method calibrates preprocessed allele-specific copy number estimates (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific allelic crosstalk. The resulting ASCNs are on average more accurate, which increases the power of segmentation methods for detecting changes between copy number states in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina.

r-clidatajp 0.5.2
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-stringi@1.8.7 r-rvest@1.0.5 r-rlang@1.1.6 r-magrittr@2.0.4 r-httr@1.4.7 r-dplyr@1.1.4 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=clidatajp
Licenses: Expat
Build system: r
Synopsis: Data from Japan Meteorological Agency
Description:

Includes climate data from Japan Meteorological Agency ('JMA') <https://www.jma.go.jp/jma/indexe.html>. Can download climate data from JMA'.

r-cmanalysis 1.0.1
Propagated dependencies: r-stringr@1.6.0 r-pheatmap@1.0.13 r-igraph@2.2.1 r-ggplot2@4.0.1 r-factoextra@1.0.7 r-cluster@2.1.8.1 r-clue@0.3-66
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cmAnalysis
Licenses: GPL 3
Build system: r
Synopsis: Process and Visualise Concept Mapping Data
Description:

Concept maps are versatile tools used across disciplines to enhance understanding, teaching, brainstorming, and information organization. This package provides functions for processing and visualizing concept mapping data, involving the sequential use of cluster analysis (for sorting participants and statements), multidimensional scaling (for positioning statements in a conceptual space), and visualization techniques, including point cluster maps and dendrograms. The methodology and its validity are discussed in Kampen, J.K., Hageman, J.A., Breuer, M., & Tobi, H. (2025). "The validity of concept mapping: let's call a spade a spade." Qual Quant. <doi:10.1007/s11135-025-02351-z>.

r-cepiweek 0.1.2
Propagated dependencies: r-lubridate@1.9.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cepiweek
Licenses: Expat
Build system: r
Synopsis: Continuous Epidemiological Week Indexing for Time-Series Analysis
Description:

This package provides a simple algorithm to generate a continuous epidemiological week index from date variables in a dataframe. Weeks are computed as sequential 7-day intervals starting from the earliest observed date. They do not reset at calendar year boundaries and are not ISO 8601 nor MMWR calendar weeks. The approach is intended for epidemiological modeling and time-series analysis where temporal continuity is required. The generated weeks are sequential and do not reset at calendar year boundaries.

r-contentanalysis 1.0.0
Propagated dependencies: r-visnetwork@2.1.4 r-tidytext@0.4.3 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-purrr@1.2.0 r-pdftools@3.6.0 r-openalexr@3.0.1 r-magrittr@2.0.4 r-jsonlite@2.0.0 r-igraph@2.2.1 r-httr2@1.2.1 r-dplyr@1.1.4 r-base64enc@0.1-3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/massimoaria/contentanalysis
Licenses: GPL 3+
Build system: r
Synopsis: Scientific Content and Citation Analysis from PDF Documents
Description:

This package provides comprehensive tools for extracting and analyzing scientific content from PDF documents, including citation extraction, reference matching, text analysis, and bibliometric indicators. Supports multi-column PDF layouts, CrossRef API <https://www.crossref.org/documentation/retrieve-metadata/rest-api/> integration, and advanced citation parsing.

r-coxerr 1.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=coxerr
Licenses: GPL 2+
Build system: r
Synopsis: Cox Regression with Dependent Error in Covariates
Description:

Perform the functional modeling methods of Huang and Wang (2018) <doi:10.1111/biom.12741> to accommodate dependent error in covariates of the proportional hazards model. The adopted measurement error model has minimal assumptions on the dependence structure, and an instrumental variable is supposed to be available.

r-cleants 0.1.2
Propagated dependencies: r-transformr@0.1.5 r-tibble@3.3.0 r-stringr@1.6.0 r-shiny@1.11.1 r-lubridate@1.9.4 r-imputets@3.4 r-imputetestbench@3.0.3 r-glue@1.8.0 r-ggtext@0.1.2 r-ggplot2@4.0.1 r-gganimate@1.0.11 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Mayur1009/cleanTS
Licenses: GPL 3+
Build system: r
Synopsis: Testbench for Univariate Time Series Cleaning
Description:

This package provides a reliable and efficient tool for cleaning univariate time series data. It implements reliable and efficient procedures for automating the process of cleaning univariate time series data. The package provides integration with already developed and deployed tools for missing value imputation and outlier detection. It also provides a way of visualizing large time-series data in different resolutions.

r-coranking 0.2.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://coranking.guido-kraemer.com/
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Co-Ranking Matrix
Description:

Calculates the co-ranking matrix to assess the quality of a dimensionality reduction.

r-chem16s 1.2.0
Propagated dependencies: r-rlang@1.1.6 r-reshape2@1.4.5 r-plyr@1.8.9 r-phyloseq@1.54.0 r-ggplot2@4.0.1 r-canprot@2.0.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/jedick/chem16S
Licenses: GPL 3
Build system: r
Synopsis: Chemical Metrics for Microbial Communities
Description:

Combines taxonomic classifications of high-throughput 16S rRNA gene sequences with reference proteomes of archaeal and bacterial taxa to generate amino acid compositions of community reference proteomes. Calculates chemical metrics including carbon oxidation state ('Zc'), stoichiometric oxidation and hydration state ('nO2 and nH2O'), H/C, N/C, O/C, and S/C ratios, grand average of hydropathicity ('GRAVY'), isoelectric point ('pI'), protein length, and average molecular weight of amino acid residues. Uses precomputed reference proteomes for archaea and bacteria derived from the Genome Taxonomy Database ('GTDB'). Also includes reference proteomes derived from the NCBI Reference Sequence ('RefSeq') database and manual mapping from the RDP Classifier training set to RefSeq taxonomy as described by Dick and Tan (2023) <doi:10.1007/s00248-022-01988-9>. Processes taxonomic classifications in RDP Classifier format or OTU tables in phyloseq-class objects from the Bioconductor package phyloseq'.

r-connectomoda 1.0.0
Propagated dependencies: r-readr@2.1.6 r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=connectoModa
Licenses: Expat
Build system: r
Synopsis: Download Data from Moda
Description:

Connect to WFP's Moda platform to R, download data, and obtain the list of individuals with access to the project along with their access level.

r-corels 0.0.5
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/corels/rcppcorels
Licenses: GPL 2+
Build system: r
Synopsis: R Binding for the 'Certifiably Optimal RulE ListS (Corels)' Learner
Description:

The Certifiably Optimal RulE ListS (Corels) learner by Angelino et al described in <doi:10.48550/arXiv.1704.01701> provides interpretable decision rules with an optimality guarantee, and is made available to R with this package. See the file AUTHORS for a list of copyright holders and contributors.

r-crstools 1.0.0
Propagated dependencies: r-terra@1.8-86 r-sf@1.0-23 r-rlang@1.1.6 r-jpeg@0.1-11 r-ggplot2@4.0.1 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=crstools
Licenses: GPL 3+
Build system: r
Synopsis: Tools to Work with Projections
Description:

Choose the appropriate map projection for a given application, visualise the resulting distortion, and georeference data from unknown projections. The full functionalities of the package are described in Pozzi et al. (2026) <doi:10.31223/X5K17P> (pre-print).

r-clusttmb 0.1.0
Propagated dependencies: r-tmb@1.9.18 r-sf@1.0-23 r-reformulas@0.4.2 r-rcppeigen@0.3.4.0.2 r-moeclust@1.6.0 r-mclust@6.1.2 r-matrix@1.7-4 r-lme4@1.1-37 r-fmesher@0.5.0 r-clustmixtype@0.4-2 r-cluster@2.1.8.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Andrea-Havron/clustTMB
Licenses: GPL 3
Build system: r
Synopsis: Spatio-Temporal Finite Mixture Model using 'TMB'
Description:

Fits a spatio-temporal finite mixture model using TMB'. Covariate, spatial and temporal random effects can be incorporated into the gating formula using multinomial logistic regression, the expert formula using a generalized linear mixed model framework, or both.

r-covid19srilanka 1.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=covid19srilanka
Licenses: Expat
Build system: r
Synopsis: The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Data in Sri Lanka
Description:

This package provides a daily counts of the Coronavirus (COVID19) cases by districts and country. Data source: Epidemiological Unit, Ministry of Health, Sri Lanka <https://www.epid.gov.lk/web/>.

r-cpgfr 0.0.1.0
Propagated dependencies: r-stringr@1.6.0 r-osfr@0.2.9 r-lubridate@1.9.4 r-deflatebr@1.1.2 r-data-table@1.17.8 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cpgfR
Licenses: GPL 3
Build system: r
Synopsis: Consolidates Information from the Federal Government Payment Card
Description:

This package provides access to consolidated information from the Brazilian Federal Government Payment Card. Includes functions to retrieve, clean, and organize data directly from the Transparency Portal <https://portaldatransparencia.gov.br/download-de-dados/cpgf/> and a curated dataset hosted on the Open Science Framework <https://osf.io/z2mxc/>. Useful for public spending analysis, transparency research, and reproducible workflows in auditing or investigative journalism.

r-cliff 0.1.2
Propagated dependencies: r-rlang@1.1.6 r-processx@3.8.6 r-ellipsis@0.3.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/RTagBot/cliff
Licenses: Expat
Build system: r
Synopsis: Execute Command Line Programs Interactively
Description:

Execute command line programs and format results for interactive use. It is based on the package processx so it does not use shell to start up the process like system() and system2(). It also provides a simpler and cleaner interface than processx::run().

r-corona 0.3.0
Propagated dependencies: r-reshape2@1.4.5 r-qicharts2@0.8.1 r-plyr@1.8.9 r-gridextra@2.3 r-ggplot2@4.0.1 r-gganimate@1.0.11
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=corona
Licenses: GPL 3
Build system: r
Synopsis: Coronavirus ('Rona') Data Exploration
Description:

Manipulate and view coronavirus data and other societally relevant data at a basic level.

r-cmhc 0.2.10
Propagated dependencies: r-tibble@3.3.0 r-stringr@1.6.0 r-rlang@1.1.6 r-readr@2.1.6 r-httr@1.4.7 r-dplyr@1.1.4 r-digest@0.6.39 r-aws-s3@0.3.22
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/mountainMath/cmhc
Licenses: Expat
Build system: r
Synopsis: Access, Retrieve, and Work with CMHC Data
Description:

Wrapper around the Canadian Mortgage and Housing Corporation (CMHC) web interface. It enables programmatic and reproducible access to a wide variety of housing data from CMHC.

Total packages: 69239