_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


python-mne-faster 1.2.2
Propagated dependencies: python-mne@1.11.0 python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/wmvanvliet/mne-faster
Licenses: Modified BSD
Build system: pyproject
Synopsis: Automatic EEG bad channel/epoch/ICA-component detection using FASTER
Description:

FASTER is a fully automated, unsupervised method for processing of high density EEG data.

python-pyxdf 1.17.1
Propagated dependencies: python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/xdf-modules/pyxdf
Licenses: FreeBSD
Build system: pyproject
Synopsis: Python library for importing XDF (Extensible Data Format)
Description:

XDF is a general-purpose container format for multi-channel time series data with extensive associated meta information. XDF is tailored towards biosignal data such as EEG, EMG, EOG, ECG, GSR, MEG, but it can also handle data with high sampling rate (like audio) or data with a high number of channels (like fMRI or raw video). Meta information is stored as XML.

liblsl 1.17.5
Dependencies: asio@1.36.0 boost@1.89.0 pugixml@1.12.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://labstreaminglayer.readthedocs.io/
Licenses: Expat
Build system: cmake
Synopsis: Lab Streaming Layer library
Description:

This package provides a C++ library for multi-modal time-synched data transmission over the local network.

python-mne-bids 0.18.0
Propagated dependencies: python-curryreader@0.1.2 python-defusedxml@0.7.1 python-edfio@0.4.10 python-eeglabio@0.1.2 python-filelock@3.16.1 python-h5py@3.13.0 python-matplotlib@3.8.2 python-mne@1.11.0 python-nibabel@5.3.2 python-numpy@1.26.4 python-pandas@2.2.3 python-pybv@0.7.6 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-bids
Licenses: Modified BSD
Build system: pyproject
Synopsis: Organize MEG, EEG, and iEEG data according to the BIDS specification
Description:

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

python-elephant 1.1.1-0.db5a5f0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://neuralensemble.org/elephant/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Analysis of electrophysiology data in Python
Description:

Elephant (Electrophysiology Analysis Toolkit) is an open-source, community centered library for the analysis of electrophysiological data in the Python programming language. The focus of Elephant is on generic analysis functions for spike train data and time series recordings from electrodes, such as the local field potentials (LFP) or intracellular voltages. In addition to providing a common platform for analysis code from different laboratories, the Elephant project aims to provide a consistent and homogeneous analysis framework that is built on a modular foundation. Elephant is the direct successor to Neurotools and maintains ties to complementary projects such as OpenElectrophy and spykeviewer.

python-bycycle 1.2.0
Propagated dependencies: python-matplotlib@3.8.2 python-neurodsp@2.3.0 python-numpy@1.26.4 python-pandas@2.2.3 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://bycycle-tools.github.io/
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Cycle-by-cycle analyses of neural oscillations
Description:

bycycle is a tool for quantifying features of neural oscillations in the time domain, as opposed to the frequency domain, using a cycle-by-cycle approach.

python-picard 0.8.1
Propagated dependencies: python-numpy@1.26.4 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mind-inria.github.io/picard
Licenses: Modified BSD
Build system: pyproject
Synopsis: Preconditoned ICA for Real Data
Description:

Picard provides Python/Octave/MATLAB code for the preconditionned ICA for real data.

python-alphacsc 0.4.1
Propagated dependencies: python-joblib@1.5.2 python-matplotlib@3.8.2 python-mne@1.11.0 python-numba@0.61.0 python-numpy@1.26.4 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://alphacsc.github.io/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Convolutional dictionary learning for noisy signals
Description:

This is a library to perform shift-invariant sparse dictionary learning, also known as convolutional sparse coding (CSC), on time-series data.

python-mne-icalabel 0.8.1
Propagated dependencies: python-joblib@1.5.2 python-matplotlib@3.8.2 python-mne@1.11.0 python-mne-bids@0.18.0 python-numpy@1.26.4 python-packaging@25.0 python-pandas@2.2.3 python-picard@0.8.1 python-pooch@1.8.1 python-psutil@7.0.0 python-pytorch@2.9.0 python-qtpy@2.4.3 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-icalabel
Licenses: Modified BSD
Build system: pyproject
Synopsis: Automatic labeling of ICA components from MEG, EEG and iEEG data with MNE
Description:

mne-icalabel is a Python package for labeling independent components that stem from an Independent Component Analysis (ICA).

python-mne-lsl 1.12.0
Dependencies: liblsl@1.17.5
Propagated dependencies: python-click@8.1.8 python-mne@1.11.0 python-numpy@1.26.4 python-packaging@25.0 python-pooch@1.8.1 python-psutil@7.0.0 python-pyqtgraph@0.13.7 python-qtpy@2.4.3 python-scipy@1.12.0 python-tomli@2.2.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-lsl
Licenses: Modified BSD
Build system: pyproject
Synopsis: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices
Description:

MNE-LSL (Documentation website) provides a real-time brain signal streaming framework. MNE-LSL contains an improved python-binding for the Lab Streaming Layer C++ library, mne_lsl.lsl, replacing pylsl. This low-level binding is used in high-level objects to interact with LSL streams.

python-snirf 0.8.0
Propagated dependencies: python-colorama@0.4.6 python-h5py@3.13.0 python-numpy@1.26.4 python-termcolor@2.5.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/BUNPC/pysnirf2
Licenses: GPL 3
Build system: pyproject
Synopsis: Interface and validator for SNIRF files
Description:

Python library for reading, writing, and validating SNIRF files

python-eeg-positions 2.1.2
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://eeg-positions.readthedocs.io/
Licenses: Expat
Build system: pyproject
Synopsis: Compute and plot standard EEG electrode positions
Description:

This package contains code to compute the standard EEG electrode locations on a spherical head model for the 10-20, 10-10, and 10-05 system.

python-pyabf 2.3.8
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://swharden.com/pyabf/
Licenses: Expat
Build system: pyproject
Synopsis: Python library for reading files in Axon Binary Format (ABF)
Description:

pyABF is a Python package for reading electrophysiology data from ABF files. It was created with the goal of providing a Pythonic API to access the content of ABF files which is so intuitive to use (with a predictive IDE) that documentation is largely unnecessary.

mnelab 1.0.8
Propagated dependencies: python-edfio@0.4.10 python-matplotlib@3.8.2 python-mne@1.11.0 python-numpy@1.26.4 python-pybv@0.7.6 python-pyside-6@6.9.2 python-pyxdf@1.17.1 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/cbrnr/mnelab
Licenses: Modified BSD
Build system: pyproject
Synopsis: A graphical user interface for MNE
Description:

MNELAB is a GUI for MNE-Python, a Python package for EEG/MEG analysis.

spikeinterface-gui 0.12.0
Propagated dependencies: python-markdown@3.10 python-pyqtgraph@0.13.7 python-pyside-6@6.9.2 python-spikeinterface@0.103.2
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://spikeinterface-gui.readthedocs.io/
Licenses: Expat
Build system: pyproject
Synopsis: GUI for spikeinterface objects
Description:

This package provides a cross-platform interactive viewer to inspect the final results and quality of any spike sorter supported by spikeinterface.

python-curryreader 0.1.2
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/mne-tools/curry-python-reader
Licenses: Modified BSD
Build system: pyproject
Synopsis: File reader for Compumedics Neuroscan data formats
Description:

This is an open-source tool which allows to load CURRY data into Python. It supports: raw float (.cdt), ascii (.cdt), legacy raw float (.dat) and legacy ascii (.dat).

python-klusta 3.0.16-0.408e898
Propagated dependencies: python-click@8.1.8 python-h5py@3.13.0 python-numpy@1.26.4 python-scipy@1.12.0 python-six@1.17.0 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://klusta.cortexlab.net
Licenses: Modified BSD
Build system: pyproject
Synopsis: Spike detection and automatic clustering for spike sorting
Description:

klusta is an open source package for automatic spike sorting of multielectrode neurophysiological recordings made with probes containing up to a few dozens of sites.

python-fooof 1.1.1
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3 python-scipy@1.12.0 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/fooof-tools/fooof
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Fitting oscillations & one over f (FOOOF)
Description:

Fast, efficient, and physiologically-informed tool to parameterize neural power spectra

python-mne 1.11.0
Dependencies: procps@4.0.3
Propagated dependencies: python-decorator@5.2.1 python-jinja2@3.1.2 python-lazy-loader@0.4 python-matplotlib@3.8.2 python-numpy@1.26.4 python-packaging@25.0 python-pooch@1.8.1 python-scipy@1.12.0 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/stable/index.html
Licenses: Modified BSD
Build system: pyproject
Synopsis: MEG and EEG analysis and visualization
Description:

MNE-Python is an open-source Python package for exploring, visualizing, and analyzing human neurophysiological data such as MEG, EEG, sEEG, ECoG, and more. It includes modules for data input/output, preprocessing, visualization, source estimation, time-frequency analysis, connectivity analysis, machine learning, statistics, and more.

device-xlib 0.8.6
Dependencies: openblas@0.3.30
Channel: guix-science
Location: guix-science/packages/fortran.scm (guix-science packages fortran)
Home page: https://gitlab.com/max-centre/components/devicexlib
Licenses: GPL 3+
Build system: gnu
Synopsis: Fortran library wrapping device-oriented routines and utilities
Description:

deviceXlib is a library that wraps device-oriented routines and utilities, such as device data allocation, host-device data transfers. It supports CUDA language, together with OpenACC and OpenMP programming paradigms. It wraps a subset of functions from Nvidia cuBLAS, Intel oneMKL BLAS and AMD rocBLAS libraries.

fortran-fpm 0.13.0
Dependencies: gfortran@14.3.0
Channel: guix-science
Location: guix-science/packages/fortran.scm (guix-science packages fortran)
Home page: https://fpm.fortran-lang.org
Licenses: Expat
Build system: copy
Synopsis: Fortran Package Manager
Description:

Fortran Package Manager (fpm) is a package manager and build system for Fortran. Its key goal is to improve the user experience of Fortran programmers. It does so by making it easier to build your Fortran program or library, run the executables, tests, and examples, and distribute it as a dependency to other Fortran projects. Fpm's user interface is modeled after Rust's Cargo, so if you're familiar with that tool, you will feel at home with fpm. Fpm's long term vision is to nurture and grow the ecosystem of modern Fortran applications and libraries.

device-xlib 0.2.0-1.08558f7
Dependencies: openblas@0.3.30 lapack@3.12.1
Channel: guix-science
Location: guix-science/packages/fortran.scm (guix-science packages fortran)
Home page: https://gitlab.com/max-centre/components/devicexlib
Licenses: GPL 3+
Build system: gnu
Synopsis: Fortran library wrapping device-oriented routines and utilities
Description:

deviceXlib is a library that wraps device-oriented routines and utilities, such as device data allocation, host-device data transfers. It supports CUDA language, together with OpenACC and OpenMP programming paradigms. It wraps a subset of functions from Nvidia cuBLAS, Intel oneMKL BLAS and AMD rocBLAS libraries.

fypp 3.2
Channel: guix-science
Location: guix-science/packages/fortran.scm (guix-science packages fortran)
Home page: https://github.com/aradi/fypp
Licenses: FreeBSD
Build system: pyproject
Synopsis: Python powered Fortran preprocessor
Description:

Fypp is a Python powered preprocessor. It can be used for any programming languages but its primary aim is to offer a Fortran preprocessor, which helps to extend Fortran with condititional compiling and template metaprogramming capabilities. Instead of introducing its own expression syntax, it uses Python expressions in its preprocessor directives, offering the consistency and versatility of Python when formulating metaprogramming tasks.

python-rioxarray 0.21.0
Propagated dependencies: python-numpy@1.26.4 python-packaging@25.0 python-pyproj@3.6.1 python-rasterio@1.3.7 python-scipy@1.12.0 python-xarray@2023.12.0
Channel: guix-science
Location: guix-science/packages/geoscience.scm (guix-science packages geoscience)
Home page: https://corteva.github.io/rioxarray/
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Geospatial xarray extension powered by rasterio
Description:

This package provides a geospatial extension for xarray powered by rasterio.

Total packages: 69239