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     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


python-mne-connectivity 0.7
Propagated dependencies: python-mne@1.10.2 python-netcdf4@1.6.2 python-numpy@1.26.4 python-pandas@2.2.3 python-scipy@1.12.0 python-tqdm@4.67.1 python-xarray@2023.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-connectivity
Licenses: Modified BSD
Synopsis: Connectivity data analysis with MNE
Description:

MNE-Connectivity is an open-source Python package for connectivity and related measures of MEG, EEG, or iEEG data built on top of the MNE-Python API. It includes modules for data input/output, visualization, common connectivity analysis, and post-hoc statistics and processing.

python-pynwb 3.1.2
Propagated dependencies: python-dateutil@2.9.0 python-h5py@3.13.0 python-hdmf@4.1.2 python-numpy@1.26.4 python-pandas@2.2.3 python-platformdirs@4.3.6
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://pynwb.readthedocs.io
Licenses: Modified BSD
Synopsis: Package for working with Neurodata stored in the NWB format
Description:

PyNWB is a Python package for working with NWB files. It provides a high-level API for efficiently working with Neurodata stored in the NWB format.

python-nwbinspector 0.6.5
Propagated dependencies: python-aiohttp@3.11.11 python-click@8.1.8 python-fsspec@2025.9.0 python-hdmf-zarr@0.12.0 python-isodate@0.7.2 python-jsonschema@4.23.0 python-natsort@8.4.0 python-packaging@25.0 python-pynwb@3.1.2 python-pyyaml@6.0.2 python-requests@2.32.5 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://nwbinspector.readthedocs.io/
Licenses: Modified BSD
Synopsis: Inspect NWB files for compliance with NWB Best Practices
Description:

This inspector is meant as a companion to the PyNWB validator, which checks for strict schema compliance. This tool attempts to apply some common sense to find components of the file that are technically compliant, but possibly incorrect, suboptimal in their representation, or deviate from best practices.

python-edfio 0.4.10
Propagated dependencies: python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://edfio.readthedocs.io
Licenses: ASL 2.0
Synopsis: Read and write EDF/EDF+ files
Description:

edfio is a Python package for reading and writing EDF and EDF+C files.

python-curryreader 0.1.2
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/mne-tools/curry-python-reader
Licenses: Modified BSD
Synopsis: File reader for Compumedics Neuroscan data formats
Description:

This is an open-source tool which allows to load CURRY data into Python. It supports: raw float (.cdt), ascii (.cdt), legacy raw float (.dat) and legacy ascii (.dat).

python-mne-rsa 0.10
Propagated dependencies: python-mne@1.10.2 python-nibabel@5.3.2 python-pyside-6@6.9.2 python-pyvista@0.44.2 python-pyvistaqt@0.11.3 python-scikit-learn@1.7.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-rsa
Licenses: Modified BSD
Synopsis: Representational Similarity Analysis on MEG and EEG data
Description:

This is a Python package for performing representational similarity analysis (RSA) using MNE-Python data structures. The main use-case is to perform RSA using a “searchlight” approach through time and/or a volumetric or surface source space.

python-pycrostates 0.6.1
Propagated dependencies: python-decorator@5.2.1 python-jinja2@3.1.2 python-joblib@1.5.1 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-packaging@25.0 python-pooch@1.8.1 python-psutil@7.0.0 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://pycrostates.readthedocs.io
Licenses: Modified BSD
Synopsis: Python package for EEG microstate segmentation
Description:

This package provides a simple open source Python package for EEG microstate segmentation.

python-nixio 1.5.4
Propagated dependencies: python-h5py@3.13.0 python-numpy@1.26.4 python-six@1.17.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/G-Node/nixpy
Licenses: Modified BSD
Synopsis: Python implementation of the NIX data model
Description:

The NIX data model allows to store fully annotated scientific dataset, i.e. the data together with its metadata within the same container. The current implementations store the actual data using the HDF5 file format as a storage backend.

python-antio 0.6.1
Propagated dependencies: python-click@8.1.8 python-numpy@1.26.4 python-packaging@25.0 python-psutil@7.0.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/mscheltienne/antio
Licenses: GPL 3
Synopsis: I/O library for the CNT format from ANT Neuro
Description:

This package provides I/O functions for the CNT format from ANT Neuro.

python-mffpy 0.10.0
Propagated dependencies: python-deprecated@1.2.14 python-lxml@6.0.1 python-numpy@1.26.4 python-pytz@2025.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/BEL-Public/mffpy
Licenses: ASL 2.0
Synopsis: Reader and Writer for Philips' MFF file format
Description:

mffpy is a lean reader for EGI's MFF file format. These files are directories containing several files of mostly xml files, but also binary files.

python-mne-bids 0.17.0
Propagated dependencies: python-mne@1.10.2 python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-bids
Licenses: Modified BSD
Synopsis: Organize MEG, EEG, and iEEG data according to the BIDS specification
Description:

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

python-snirf 0.8.0
Propagated dependencies: python-colorama@0.4.6 python-h5py@3.13.0 python-numpy@1.26.4 python-termcolor@2.5.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/BUNPC/pysnirf2
Licenses: GPL 3
Synopsis: Interface and validator for SNIRF files
Description:

Python library for reading, writing, and validating SNIRF files

python-mne-qt-browser 0.7.2
Propagated dependencies: python-darkdetect@0.8.0 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-pyopengl@3.1.9 python-pyqtgraph@0.13.7 python-qdarkstyle@3.2.3 python-qtpy@2.4.3 python-scipy@1.12.0 python-scooby@0.5.12
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools
Licenses: Modified BSD
Synopsis: Backend based on pyqtgraph for the 2D-Data-Browser in MNE-Python
Description:

This package provides a new backend based on pyqtgraph for the 2D-Data-Browser in MNE-Python.

python-eeg-positions 2.1.2
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://eeg-positions.readthedocs.io/
Licenses: Expat
Synopsis: Compute and plot standard EEG electrode positions
Description:

This package contains code to compute the standard EEG electrode locations on a spherical head model for the 10-20, 10-10, and 10-05 system.

mnelab 1.0.5
Propagated dependencies: python-edfio@0.4.10 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-pybv@0.7.6 python-pyside-6@6.9.2 python-pyxdf@1.17.1 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/cbrnr/mnelab
Licenses: Modified BSD
Synopsis: A graphical user interface for MNE
Description:

MNELAB is a GUI for MNE-Python, a Python package for EEG/MEG analysis.

python-mne-icalabel 0.8.1
Propagated dependencies: python-mne@1.10.2 python-numpy@1.26.4 python-packaging@25.0 python-pooch@1.8.1 python-psutil@7.0.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-icalabel
Licenses: Modified BSD
Synopsis: Automatic labeling of ICA components from MEG, EEG and iEEG data with MNE
Description:

mne-icalabel is a Python package for labeling independent components that stem from an Independent Component Analysis (ICA).

python-wfdb 4.3.0
Propagated dependencies: python-aiohttp@3.11.11 python-fsspec@2025.9.0 python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3 python-requests@2.32.5 python-scipy@1.12.0 python-soundfile@0.13.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://wfdb.readthedocs.io
Licenses: Expat
Synopsis: Tools for reading, writing, and processing physiologic signals and annotations
Description:

A Python-native package for reading, writing, processing, and plotting physiologic signal and annotation data. The core I/O functionality is based on the Waveform Database (WFDB) specifications.

python-nwb2bids 0.6.0
Propagated dependencies: python-pandas@2.2.3 python-pydantic@2.10.4 python-pynwb@3.1.2 python-rich-click@1.8.9 python-ruamel.yaml@0.18.14 python-typing-extensions@4.15.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://nwb2bids.readthedocs.io/
Licenses: Expat
Synopsis: Reorganize NWB files into a BIDS directory layout
Description:

nwb2bids reorganizes NWB files into a BIDS directory layout.

Features:

  • Automatically renames NWB files and their directories to conform to BIDS conventions.

  • Extracts relevant metadata from NWB files to populate BIDS sidecar TSV & JSON files.

  • Currently supports BEP32 (micro-electrode electrophysiology) data types, such as extracellular (ecephys) and intracellular (icephys) electrophysiology, as well as associated behavioral events.

python-picard 0.8
Propagated dependencies: python-numpy@1.26.4 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mind-inria.github.io/picard
Licenses: Modified BSD
Synopsis: Preconditoned ICA for Real Data
Description:

Picard provides Python/Octave/MATLAB code for the preconditionned ICA for real data.

python-autoreject 0.4.3
Propagated dependencies: python-h5io@0.2.5 python-joblib@1.5.1 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-pymatreader@1.1.0 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: http://autoreject.github.io
Licenses: Modified BSD
Synopsis: Automated rejection and repair of epochs in M/EEG
Description:

This is a library to automatically reject bad trials and repair bad sensors in magneto-/electroencephalography (M/EEG) data.

python-igor2 0.5.12
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/AFM-analysis/igor2
Licenses: LGPL 3
Synopsis: Interface for reading binary IGOR files
Description:

Python parser for Igor Binary Waves (.ibw) and Packed Experiment (.pxp) files written by WaveMetrics' IGOR Pro software.

python-bycycle 1.2.0
Propagated dependencies: python-matplotlib@3.8.2 python-neurodsp@2.3.0 python-numpy@1.26.4 python-pandas@2.2.3 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://bycycle-tools.github.io/
Licenses: ASL 2.0
Synopsis: Cycle-by-cycle analyses of neural oscillations
Description:

bycycle is a tool for quantifying features of neural oscillations in the time domain, as opposed to the frequency domain, using a cycle-by-cycle approach.

python-sleepecg 0.5.9
Propagated dependencies: python-numpy@1.26.4 python-pyyaml@6.0.2 python-requests@2.32.5 python-scipy@1.12.0 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://sleepecg.readthedocs.io
Licenses: Modified BSD
Synopsis: Sleep stage classification using ECG data
Description:

This package provides a library for sleep stage classification using ECG data.

python-pybv 0.7.6
Propagated dependencies: python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://pybv.readthedocs.io
Licenses: Modified BSD
Synopsis: I/O utility for the BrainVision data format
Description:

pybv is a lightweight I/O utility for the BrainVision data format. The BrainVision data format is a recommended data format for use in the Brain Imaging Data Structure.

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