xarray-dataclasses is a Python package that makes it easy to create xarray's DataArray and Datase objects that are "typed" (i.e. fixed dimensions, data type, coordinates, attributes, and name) using the Python's dataclass.

Snakemake aims to reduce the complexity of creating workflows by providing a clean and modern domain specific specification language (DSL) in Python style, together with a fast and comfortable execution environment.

Hist is an analyst-friendly front-end for boost-histogram.

Pandas 0.23 added a simple API for registering accessors with Pandas objects. Pandas-flavor extends Pandas' extension API by

• adding support for registering methods as well

• making each of these functions backwards compatible with older versions of Pandas

Scikit-image is a collection of algorithms for image processing.

geosketch is a Python package that implements the geometric sketching algorithm described by Brian Hie, Hyunghoon Cho, Benjamin DeMeo, Bryan Bryson, and Bonnie Berger in "Geometric sketching compactly summarizes the single-cell transcriptomic landscape", Cell Systems (2019). This package provides an example implementation of the algorithm as well as scripts necessary for reproducing the experiments in the paper.

This package provides a Python package for calculating tissue-specificity metrics for gene expression.

pynrrd is a Python module for reading and writing NRRD files (format designed to support scientific visualization and image processing involving N-dimensional raster data) into and from numpy arrays.

This is a rewrite of Dask DataFrame that includes query optimization and generally improved organization.

This package contains public type stubs for python-pandas, following the convention of providing stubs in a separate package, as specified in PEP 561. The stubs cover the most typical use cases of python-pandas. In general, these stubs are narrower than what is possibly allowed by python-pandas, but follow a convention of suggesting best recommended practices for using python-pandas.

python-pandera provides a flexible and expressive API for performing data validation on dataframe-like objects to make data processing pipelines more readable and robust. Dataframes contain information that python-pandera explicitly validates at runtime. This is useful in production-critical data pipelines or reproducible research settings. With python-pandera, you can:

• Define a schema once and use it to validate different dataframe types.

• Check the types and properties of columns.

• Perform more complex statistical validation like hypothesis testing.

• Seamlessly integrate with existing data pipelines via function decorators.

• Define dataframe models with the class-based API with pydantic-style syntax.

• Synthesize data from schema objects for property-based testing.

• Lazily validate dataframes so that all validation rules are executed.

• Integrate with a rich ecosystem of tools like python-pydantic, python-fastapi and python-mypy.

This package provides utilities for exploratory analysis of large scale genetic variation data.

Grip is a command-line server application written in Python that uses the GitHub Markdown API to render a local Markdown file. The styles and rendering come directly from GitHub, so you'll know exactly how it will appear. Changes you make to the file will be instantly reflected in the browser without requiring a page refresh.

This package provides an easy-to-use SNI endpoint for use with the Twisted web framework.

Get a public suffix for a domain name using the Public Suffix List. Forked from and using the same API as the publicsuffix package.

wsgiprox is a Python WSGI (Web Server Gateway Interface) middle-ware for adding HTTP and HTTPS proxy support to a WSGI application. The library accepts HTTP and HTTPS proxy connections, and routes them to a designated prefix.

Socket.IO integration for Flask applications

OpenTelemetry Python API.

python-bottle is a WSGI framework for small web-applications.

The dpkt module is a fast, simple packet generator and parser for the basic TCP/IP protocols.

Selenium simplifies web browser automation. It specifically provides infrastructure for the W3C WebDriver specification — a platform and language-neutral coding interface compatible with all major web browsers.

Selenium Manager is a CLI tool that automatically manages the browser/driver infrastructure required by Selenium.

Socks is a library providing core proxy (SOCKS4, SOCKS5, HTTP tunneling) functionality.

S3transfer is a Python library for managing Amazon S3 transfers.

Zope.proxy provides generic, transparent proxies for Python. Proxies are special objects which serve as mostly-transparent wrappers around another object, intervening in the apparent behavior of the wrapped object only when necessary to apply the policy (e.g., access checking, location brokering, etc.) for which the proxy is responsible.