Toys / Webring for GNU Guix channels

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.

r-pgxrpi 1.4.4

Propagated dependencies: r-yaml@2.3.10 r-survminer@0.5.0 r-survival@3.8-3 r-summarizedexperiment@1.38.1 r-s4vectors@0.46.0 r-lubridate@1.9.4 r-httr@1.4.7 r-ggplot2@3.5.2 r-genomicranges@1.60.0 r-future-apply@1.11.3 r-future@1.49.0 r-dplyr@1.1.4 r-circlize@0.4.16 r-attempt@0.3.1

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://github.com/progenetix/pgxRpi

Licenses: Artistic License 2.0

Synopsis: R wrapper for Progenetix

Description:

The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix database—an open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.

r-pd-rjpgene-1-1-st 3.12.0

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.rjpgene.1.1.st

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for Affymetrix RJpGene-1_1-st

Description:

Platform Design Info for Affymetrix RJpGene-1_1-st.

r-porcineprobe 2.18.0

Propagated dependencies: r-annotationdbi@1.70.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/porcineprobe

Licenses: LGPL 2.0+

Synopsis: Probe sequence data for microarrays of type porcine

Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Porcine\_probe\_tab.

r-pd-hta-2-0 3.12.2

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.hta.2.0

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for Affymetrix HTA-2_0

Description:

Platform Design Info for Affymetrix HTA-2_0.

r-packfinder 1.20.0

Propagated dependencies: r-s4vectors@0.46.0 r-kmer@1.1.2 r-iranges@2.42.0 r-genomicranges@1.60.0 r-biostrings@2.76.0 r-ape@5.8-1

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://github.com/jackgisby/packFinder

Licenses: GPL 2

Synopsis: de novo Annotation of Pack-TYPE Transposable Elements

Description:

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

r-plasmut 1.6.0

Propagated dependencies: r-tibble@3.2.1 r-dplyr@1.1.4

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/plasmut

Licenses: Artistic License 2.0

Synopsis: Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic

Description:

This package provides a Bayesian method for quantifying the liklihood that a given plasma mutation arises from clonal hematopoesis or the underlying tumor. It requires sequencing data of the mutation in plasma and white blood cells with the number of distinct and mutant reads in both tissues. We implement a Monte Carlo importance sampling method to assess the likelihood that a mutation arises from the tumor relative to non-tumor origin.

r-polytect 1.0.0

Propagated dependencies: r-tidyverse@2.0.0 r-sn@2.1.1 r-smoof@1.6.0.3 r-rgenoud@5.9-0.11 r-paramhelpers@1.14.2 r-mvtnorm@1.3-3 r-mlrmbo@1.1.5.1 r-lhs@1.2.0 r-ggplot2@3.5.2 r-flowpeaks@1.54.0 r-dplyr@1.1.4 r-dicekriging@1.6.0 r-cowplot@1.1.3 r-biocmanager@1.30.25

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://github.com/emmachenlingo/Polytect

Licenses: Artistic License 2.0

Synopsis: An R package for digital data clustering

Description:

Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.

r-pd-bovgene-1-0-st 3.12.0

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.bovgene.1.0.st

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for Affymetrix BovGene-1_0-st

Description:

Platform Design Info for Affymetrix BovGene-1_0-st.

r-poem 1.0.1

Propagated dependencies: r-summarizedexperiment@1.38.1 r-spdep@1.3-11 r-spatialexperiment@1.18.1 r-sp@2.2-0 r-pdist@1.2.1 r-mclustcomp@0.3.5 r-matrixstats@1.5.0 r-matrix@1.7-3 r-igraph@2.1.4 r-fclust@2.1.3 r-elsa@1.1-28 r-cluster@2.1.8.1 r-clue@0.3-66 r-clevr@0.1.2 r-bluster@1.18.0 r-biocparallel@1.42.0 r-biocneighbors@2.2.0 r-aricode@1.0.3

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://roseyuan.github.io/poem/

Licenses: GPL 3+

Synopsis: POpulation-based Evaluation Metrics

Description:

This package provides a comprehensive set of external and internal evaluation metrics. It includes metrics for assessing partitions or fuzzy partitions derived from clustering results, as well as for evaluating subpopulation identification results within embeddings or graph representations. Additionally, it provides metrics for comparing spatial domain detection results against ground truth labels, and tools for visualizing spatial errors.

r-pd-feinberg-mm8-me-hx1 0.99.3

Propagated dependencies: r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.feinberg.mm8.me.hx1

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for NimbleGen feinberg_mm8_me_hx1

Description:

Platform Design Info for NimbleGen feinberg_mm8_me_hx1.

r-pd-hg-u95a 3.12.0

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.hg.u95a

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for The Manufacturer's Name HG_U95A

Description:

Platform Design Info for The Manufacturer's Name HG_U95A.

r-pd-cotton 3.12.0

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.cotton

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for The Manufacturer's Name Cotton

Description:

Platform Design Info for The Manufacturer's Name Cotton.

r-pd-sugar-cane 3.12.0

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.sugar.cane

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for The Manufacturer's Name Sugar_Cane

Description:

Platform Design Info for The Manufacturer's Name Sugar_Cane.

r-pd-clariom-s-human 3.14.1

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.clariom.s.human

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for Affymetrix Clariom_S_Human

Description:

Platform Design Info for Affymetrix Clariom_S_Human.

r-pd-mogene-1-1-st-v1 3.14.1

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.mogene.1.1.st.v1

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for Affymetrix MoGene-1_1-st-v1

Description:

Platform Design Info for Affymetrix MoGene-1_1-st-v1.

r-preda 1.54.0

Propagated dependencies: r-multtest@2.64.0 r-lokern@1.1-12 r-biobase@2.68.0 r-annotate@1.86.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/PREDA

Licenses: GPL 2

Synopsis: Position Related Data Analysis

Description:

Package for the position related analysis of quantitative functional genomics data.

r-phastcons35way-ucsc-mm39 3.16.0

Propagated dependencies: r-genomicscores@2.20.0 r-annotationhub@3.16.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/phastCons35way.UCSC.mm39

Licenses: Artistic License 2.0

Synopsis: UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata

Description:

Store UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata. Provide provenance and citation information for UCSC phastCons mm39 conservation score AnnotationHub resources. Illustrate in a vignette how to access those resources.

r-pd-mg-u74av2 3.12.0

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.mg.u74av2

Licenses: Artistic License 2.0

Synopsis: Platform Design Info for The Manufacturer's Name MG_U74Av2

Description:

Platform Design Info for The Manufacturer's Name MG_U74Av2.

r-pd-ht-hg-u133a 3.12.0

Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0

Channel: guix-bioc