_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pd-rat230-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rat230.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Rat230_2
Description:

Platform Design Info for The Manufacturer's Name Rat230_2.

r-pd-x-laevis-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.x.laevis.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name X_laevis_2
Description:

Platform Design Info for The Manufacturer's Name X_laevis_2.

r-pqsfinder 2.26.0
Propagated dependencies: r-s4vectors@0.48.0 r-rcpp@1.1.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-biostrings@2.78.0 r-bh@1.87.0-1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://pqsfinder.fi.muni.cz
Licenses: FreeBSD
Build system: r
Synopsis: Identification of potential quadruplex forming sequences
Description:

Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.

r-peco 1.22.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-scater@1.38.0 r-genlasso@1.6.1 r-foreach@1.5.2 r-doparallel@1.0.17 r-conicfit@1.0.4 r-circular@0.5-2 r-assertthat@0.2.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/jhsiao999/peco
Licenses: GPL 3+
Build system: r
Synopsis: Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data
Description:

Our approach provides a way to assign continuous cell cycle phase using scRNA-seq data, and consequently, allows to identify cyclic trend of gene expression levels along the cell cycle. This package provides method and training data, which includes scRNA-seq data collected from 6 individual cell lines of induced pluripotent stem cells (iPSCs), and also continuous cell cycle phase derived from FUCCI fluorescence imaging data.

r-podcall 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PoDCall
Licenses: GPL 3
Build system: r
Synopsis: Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Description:

Reads files exported from QX Manager or QuantaSoft containing amplitude values from a run of ddPCR (96 well plate) and robustly sets thresholds to determine positive droplets for each channel of each individual well. Concentration and normalized concentration in addition to other metrics is then calculated for each well. Results are returned as a table, optionally written to file, as well as optional plots (scatterplot and histogram) for both channels per well written to file. The package includes a shiny application which provides an interactive and user-friendly interface to the full functionality of PoDCall.

r-pd-cangene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cangene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix CanGene-1_0-st
Description:

Platform Design Info for Affymetrix CanGene-1_0-st.

r-pd-aragene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.aragene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix AraGene-1_0-st
Description:

Platform Design Info for Affymetrix AraGene-1_0-st.

r-path2ppi 1.40.0
Propagated dependencies: r-igraph@2.2.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.bioinformatik.uni-frankfurt.de/
Licenses: GPL 2+
Build system: r
Synopsis: Prediction of pathway-related protein-protein interaction networks
Description:

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

r-pd-feinberg-hg18-me-hx1 0.99.3
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.feinberg.hg18.me.hx1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen feinberg_hg18_me_hx1
Description:

Platform Design Info for NimbleGen feinberg_hg18_me_hx1.

r-pogos 1.30.0
Propagated dependencies: r-shiny@1.11.1 r-s4vectors@0.48.0 r-rjson@0.2.23 r-ontoproc@2.4.0 r-httr@1.4.7 r-ggplot2@4.0.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pogos
Licenses: Artistic License 2.0
Build system: r
Synopsis: PharmacOGenomics Ontology Support
Description:

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

r-pd-rta-1-0 3.12.2
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rta.1.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RTA-1_0
Description:

Platform Design Info for Affymetrix RTA-1_0.

r-pd-rabgene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rabgene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RabGene-1_1-st
Description:

Platform Design Info for Affymetrix RabGene-1_1-st.

r-pd-clariom-s-mouse 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.clariom.s.mouse
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Clariom_S_Mouse
Description:

Platform Design Info for Affymetrix Clariom_S_Mouse.

r-prostatecancergrasso 1.38.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prostateCancerGrasso
Licenses: Artistic License 2.0
Build system: r
Synopsis: Prostate Cancer Data
Description:

This package provides a Bioconductor data package for the Grasso (2012) Prostate Cancer dataset.

r-pd-citrus 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.citrus
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Citrus
Description:

Platform Design Info for The Manufacturer's Name Citrus.

r-panp 1.80.0
Propagated dependencies: r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/panp
Licenses: GPL 2+
Build system: r
Synopsis: Presence-Absence Calls from Negative Strand Matching Probesets
Description:

This package provides a function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

r-plyinteractions 1.8.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/js2264/plyinteractions
Licenses: Artistic License 2.0
Build system: r
Synopsis: Extending tidy verbs to genomic interactions
Description:

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.

r-pd-tomato 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.tomato
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Tomato
Description:

Platform Design Info for The Manufacturer's Name Tomato.

r-pd-rae230b 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rae230b
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name RAE230B
Description:

Platform Design Info for The Manufacturer's Name RAE230B.

r-pd-huex-1-0-st-v2 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.huex.1.0.st.v2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix HuEx-1_0-st-v2
Description:

Platform Design Info for Affymetrix HuEx-1_0-st-v2.

r-pd-canine-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.canine.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Canine_2
Description:

Platform Design Info for The Manufacturer's Name Canine_2.

r-pd-maize 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.maize
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Maize
Description:

Platform Design Info for The Manufacturer's Name Maize.

r-pedbarrayv9-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pedbarrayv9.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)
Description:

FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9) assembled using data from public repositories.

r-pd-fingene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.fingene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix FinGene-1_1-st
Description:

Platform Design Info for Affymetrix FinGene-1_1-st.

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Total results: 69112