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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-mu19ksuba-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu19ksuba.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Mu19KsubA Array annotation data (chip mu19ksuba)
Description:

Affymetrix Affymetrix Mu19KsubA Array annotation data (chip mu19ksuba) assembled using data from public repositories.

r-msstatsbionet 1.2.0
Propagated dependencies: r-tidyr@1.3.1 r-rcy3@2.30.0 r-r2r@0.1.2 r-msstats@4.18.1 r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://msstats.org
Licenses: FSDG-compatible
Build system: r
Synopsis: Network Analysis for MS-based Proteomics Experiments
Description:

This package provides a set of tools for network analysis using mass spectrometry-based proteomics data and network databases. The package takes as input the output of MSstats differential abundance analysis and provides functions to perform enrichment analysis and visualization in the context of prior knowledge from past literature. Notably, this package integrates with INDRA, which is a database of biological networks extracted from the literature using text mining techniques.

r-mgu74av2-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74av2.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix MG_U74Av2 Array annotation data (chip mgu74av2)
Description:

Affymetrix Affymetrix MG_U74Av2 Array annotation data (chip mgu74av2) assembled using data from public repositories.

r-mogene10stv1cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene10stv1cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mogene10stv1cdf
Description:

This package provides a package containing an environment representing the MoGene-1_0-st-v1.cdf file.

r-m20kcod-db 3.4.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/m20kcod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod)
Description:

Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod) assembled using data from public repositories.

r-mdts 1.30.0
Propagated dependencies: r-stringr@1.6.0 r-rsamtools@2.26.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicalignments@1.46.0 r-dnacopy@1.84.0 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MDTS
Licenses: Artistic License 2.0
Build system: r
Synopsis: Detection of de novo deletion in targeted sequencing trios
Description:

This package provides a package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

r-mmdiffbamsubset 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MMDiffBamSubset
Licenses: LGPL 2.0+
Build system: r
Synopsis: Example ChIP-Seq data for the MMDiff package
Description:

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS.

r-msbackendmetabolights 1.4.2
Propagated dependencies: r-spectra@1.20.0 r-s4vectors@0.48.0 r-protgenerics@1.42.0 r-progress@1.2.3 r-curl@7.0.0 r-biocfilecache@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/RforMassSpectrometry/MsBackendMetaboLights
Licenses: Artistic License 2.0
Build system: r
Synopsis: Retrieve Mass Spectrometry Data from MetaboLights
Description:

MetaboLights is one of the main public repositories for storage of metabolomics experiments, which includes analysis results as well as raw data. The MsBackendMetaboLights package provides functionality to retrieve and represent mass spectrometry (MS) data from MetaboLights. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetaboLights package.

r-mu11ksubbprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu11ksubbprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mu11ksubb
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubB\_probe\_tab.

r-muleadata 1.6.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ELTEbioinformatics/muleaData
Licenses: Expat
Build system: r
Synopsis: Genes Sets for Functional Enrichment Analysis with the 'mulea' R Package
Description:

ExperimentHubData package for the mulea comprehensive overrepresentation and functional enrichment analyser R package. Here we provide ontologies (gene sets) in a data.frame for 27 different organisms, ranging from Escherichia coli to human, all acquired from publicly available data sources. Each ontology is provided with multiple gene and protein identifiers. Please see the NEWS file for a list of changes in each version.

r-mogene21sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene21sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster)
Description:

Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster) assembled using data from public repositories.

r-mosim 2.6.0
Propagated dependencies: r-zoo@1.8-14 r-stringr@1.6.0 r-stringi@1.8.7 r-signac@1.12.0-1.8ecdde2 r-seurat@5.3.1 r-scran@1.38.0 r-s4vectors@0.48.0 r-rlang@1.1.6 r-rcpp@1.1.0 r-matrixstats@1.5.0 r-lazyeval@0.2.2 r-iranges@2.44.0 r-hiddenmarkov@1.8-14 r-ggplot2@4.0.1 r-edger@4.8.0 r-dplyr@1.1.4 r-cpp11@0.5.2
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ConesaLab/MOSim
Licenses: GPL 3
Build system: r
Synopsis: Multi-Omics Simulation (MOSim)
Description:

MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.

r-meshdbi 1.46.0
Propagated dependencies: r-rsqlite@2.4.4 r-biobase@2.70.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MeSHDbi
Licenses: Artistic License 2.0
Build system: r
Synopsis: DBI to construct MeSH-related package from sqlite file
Description:

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

r-metid 1.28.0
Propagated dependencies: r-stringr@1.6.0 r-matrix@1.7-4 r-igraph@2.2.1 r-devtools@2.4.6 r-chemminer@3.62.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ressomlab/MetID
Licenses: Artistic License 2.0
Build system: r
Synopsis: Network-based prioritization of putative metabolite IDs
Description:

This package uses an innovative network-based approach that will enhance our ability to determine the identities of significant ions detected by LC-MS.

r-mouse4302-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)
Description:

Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302) assembled using data from public repositories.

r-mouse4302cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mouse4302cdf
Description:

This package provides a package containing an environment representing the Mouse430_2.cdf file.

r-msbackendmgf 1.18.0
Propagated dependencies: r-spectra@1.20.0 r-s4vectors@0.48.0 r-protgenerics@1.42.0 r-mscoreutils@1.21.0 r-iranges@2.44.0 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/RforMassSpectrometry/MsBackendMgf
Licenses: Artistic License 2.0
Build system: r
Synopsis: Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
Description:

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

r-mitology 1.2.0
Propagated dependencies: r-scales@1.4.0 r-reactomepa@1.54.0 r-org-hs-eg-db@3.22.0 r-magrittr@2.0.4 r-ggtree@4.0.1 r-ggplot2@4.0.1 r-complexheatmap@2.26.0 r-clusterprofiler@4.18.2 r-circlize@0.4.16 r-ape@5.8-1 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/CaluraLab/mitology
Licenses: AGPL 3
Build system: r
Synopsis: Study of mitochondrial activity from RNA-seq data
Description:

mitology allows to study the mitochondrial activity throught high-throughput RNA-seq data. It is based on a collection of genes whose proteins localize in to the mitochondria. From these, mitology provides a reorganization of the pathways related to mitochondria activity from Reactome and Gene Ontology. Further a ready-to-use implementation of MitoCarta3.0 pathways is included.

r-msstatsptm 2.12.0
Propagated dependencies: r-stringr@1.6.0 r-stringi@1.8.7 r-rcpp@1.1.0 r-plotly@4.11.0 r-msstatstmt@2.18.0 r-msstatsconvert@1.20.0 r-msstats@4.18.1 r-htmltools@0.5.8.1 r-gridextra@2.3 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-data-table@1.17.8 r-checkmate@2.3.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MSstatsPTM
Licenses: Artistic License 2.0
Build system: r
Synopsis: Statistical Characterization of Post-translational Modifications
Description:

MSstatsPTM provides general statistical methods for quantitative characterization of post-translational modifications (PTMs). Supports DDA, DIA, SRM, and tandem mass tag (TMT) labeling. Typically, the analysis involves the quantification of PTM sites (i.e., modified residues) and their corresponding proteins, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization, estimation of PTM site abundance, and detection of changes in PTMs across experimental conditions.

r-messina 1.46.0
Propagated dependencies: r-survival@3.8-3 r-rcpp@1.1.0 r-plyr@1.8.9 r-ggplot2@4.0.1 r-foreach@1.5.2
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/messina
Licenses: FSDG-compatible
Build system: r
Synopsis: Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems
Description:

Messina is a collection of algorithms for constructing optimally robust single-gene classifiers, and for identifying differential expression in the presence of outliers or unknown sample subgroups. The methods have application in identifying lead features to develop into clinical tests (both diagnostic and prognostic), and in identifying differential expression when a fraction of samples show unusual patterns of expression.

r-mslp 1.12.0
Propagated dependencies: r-rankprod@3.36.0 r-randomforest@4.7-1.2 r-proc@1.19.0.1 r-org-hs-eg-db@3.22.0 r-magrittr@2.0.4 r-foreach@1.5.2 r-fmsb@0.7.6 r-dorng@1.8.6.2 r-data-table@1.17.8
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mslp
Licenses: GPL 3
Build system: r
Synopsis: Predict synthetic lethal partners of tumour mutations
Description:

An integrated pipeline to predict the potential synthetic lethality partners (SLPs) of tumour mutations, based on gene expression, mutation profiling and cell line genetic screens data. It has builtd-in support for data from cBioPortal. The primary SLPs correlating with muations in WT and compensating for the loss of function of mutations are predicted by random forest based methods (GENIE3) and Rank Products, respectively. Genetic screens are employed to identfy consensus SLPs leads to reduced cell viability when perturbed.

r-mogene20stprobeset-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene20stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mogene20 annotation data (chip mogene20stprobeset)
Description:

Affymetrix mogene20 annotation data (chip mogene20stprobeset) assembled using data from public repositories.

r-mafdb-exac-r1-0-grch38 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.ExAC.r1.0.GRCh38
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from ExAC release 1.0 for GRCh38
Description:

Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version GRCh38.

r-mira 1.32.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-data-table@1.17.8 r-bsseq@1.46.0 r-biocgenerics@0.56.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://databio.org/mira
Licenses: GPL 3
Build system: r
Synopsis: Methylation-Based Inference of Regulatory Activity
Description:

DNA methylation contains information about the regulatory state of the cell. MIRA aggregates genome-scale DNA methylation data into a DNA methylation profile for a given region set with shared biological annotation. Using this profile, MIRA infers and scores the collective regulatory activity for the region set. MIRA facilitates regulatory analysis in situations where classical regulatory assays would be difficult and allows public sources of region sets to be leveraged for novel insight into the regulatory state of DNA methylation datasets.

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Total results: 68658