Data type and tools for working with matrices having precision weights and missing data. This package provides a common representation and tools that can be used with many types of high-throughput data. The meaning of the weights is compatible with usage in the base R function "lm" and the package "limma". Calibrate weights to account for known predictors of precision. Find rows with excess variability. Perform differential testing and find rows with the largest confident differences. Find PCA-like components of variation even with many missing values, rotated so that individual components may be meaningfully interpreted. DelayedArray matrices and BiocParallel are supported.

This package provides whole-genome mappability tracks on human hg19/hg38 assembly. We employed the 100-mers mappability track from the ENCODE Project and computed weighted average of the mappability scores if multiple ENCODE regions overlap with the same bin. “Blacklist” bins, including segmental duplication regions and gaps in reference assembly from telomere, centromere, and/or heterochromatin regions are included. The dataset consists of three assembled .bam files of single-cell whole genome sequencing from 10X for illustration purposes.

Spatially-resolved transcriptomics (SRT) and single-nucleus RNA-sequencing (snRNA-seq) data from the locus coeruleus (LC) in postmortem human brain samples. Data were generated with the 10x Genomics Visium SRT and 10x Genomics Chromium snRNA-seq platforms. Datasets are stored in SpatialExperiment and SingleCellExperiment formats.

The package offers statistical tests based on the 2-Wasserstein distance for detecting and characterizing differences between two distributions given in the form of samples. Functions for calculating the 2-Wasserstein distance and testing for differential distributions are provided, as well as a specifically tailored test for differential expression in single-cell RNA sequencing data.

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Base annotation databases for worm, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

This package provides a package containing an environment representing the wheat.cdf file.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was wheat\_probe\_tab.

This package provides enhancements on the Sweave() function in the base package. In particular a facility for caching code chunk results is included.

The assembled .bam files of whole exome sequencing data from the 1000 Genomes Project. 46 samples sequenced by the Washington University Genome Sequencing Center are included.

arttime is a CLI application that blends beauty of ASCII / text art with functionality of clock / timer / pattern-based time manager in terminal ⏰

Clickclack is a simple haptic feedback and audio feedback tool. It does nothing more than emulate the clickclack sound and vibration when pressing keys. This tools reads from standard input and emits a vibration and/or a sound whenever it receives a character. It is intented to be used in combination with a virtual keyboard like svkbd (X11) or wvkbd (wayland).

The Factor programming language is a concatenative, stack-based programming language with high-level features including dynamic types, extensible syntax, macros, and garbage collection. On a practical side, Factor has a full-featured library, supports many different platforms, and has been extensively documented.

This package implements a functionality to translate standard protocols (SMTP, IMAP, CardDAV, CalDAV) into ProtonMail API requests.

This package provides Golang modules implementing WebDAV RFC 4918, CalDAV RFC 4791 and CardDAV RFC 6352 specifications.

Fan drive for various GPD devices

Userspace control for the fan on many GPD devices.

Python Netlink library.

Adjustor, a userspace program for managing the TDP of handheld devices.

Handheld Daemon, a tool for configuring handheld devices.

Bindings for FUSE.

UNIX signal handling library for Common Lisp.

Allows you to toggle the power state of your HTC/Valve Lighthouse Base Stations between on and sleep modes

This package provides a very basic version of major mode for Nushell shell scripts.